Difference between revisions of "RXN-4231"

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(Created page with "Category:reaction == Reaction RXN1G-3641 == * direction: ** left-to-right * common-name: ** cis-δ21-39-hydroxy-40-methyl-c59:1-[acp] reductase ** cis-keto-c60-meroac...")
(Created page with "Category:reaction == Reaction ISOCITDEH-RXN == * direction: ** reversible * common-name: ** isocitrate dehydrogenase * ec-number: ** [http://enzyme.expasy.org/EC/1.1.1.42...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN1G-3641 ==
+
== Reaction ISOCITDEH-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** cis-δ21-39-hydroxy-40-methyl-c59:1-[acp] reductase
+
** isocitrate dehydrogenase
−
** cis-keto-c60-meroacyl-[acp] synthase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.1.1.79 ec-2.1.1.79]
+
** [http://enzyme.expasy.org/EC/1.1.1.42 ec-1.1.1.42]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[cis-D21-39-oxo-40-Me-C59-1-ACPs]][c] '''=>''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[cis-21-CP-39-keto-40-Me-C60-ACPs]][c]
+
* 1 [[NADP]][c] '''+''' 1 [[THREO-DS-ISO-CITRATE]][c] '''<=>''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[NADPH]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ13641]]
+
* Gene: [[SJ08749]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
Line 17: Line 16:
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWYG-321]], mycolate biosynthesis:
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
** '''26''' reactions found over '''182''' reactions in the full pathway
+
* [[PWY-6549]], L-glutamine biosynthesis III:
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7268]], NAD/NADP-NADH/NADPH cytosolic interconversion (yeast):
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase):
 +
** '''10''' reactions found over '''11''' reactions in the full pathway
 +
* [[TCA]], TCA cycle I (prokaryotic):
 +
** '''9''' reactions found over '''10''' reactions in the full pathway
 +
* [[REDCITCYC]], TCA cycle VI (Helicobacter):
 +
** '''5''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7254]], TCA cycle VII (acetate-producers):
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase):
 +
** '''10''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-5913]], partial TCA cycle (obligate autotrophs):
 +
** '''10''' reactions found over '''11''' reactions in the full pathway
 +
* [[FERMENTATION-PWY]], mixed acid fermentation:
 +
** '''11''' reactions found over '''16''' reactions in the full pathway
 +
* [[P23-PWY]], reductive TCA cycle I:
 +
** '''9''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-7124]], ethylene biosynthesis V (engineered):
 +
** '''8''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-6728]], methylaspartate cycle:
 +
** '''11''' reactions found over '''19''' reactions in the full pathway
 +
</div>
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
{{#set: direction=left-to-right}}
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
{{#set: common-name=cis-&delta;21-39-hydroxy-40-methyl-c59:1-[acp] reductase|cis-keto-c60-meroacyl-[acp] synthase}}
+
* RHEA:
−
{{#set: ec-number=ec-2.1.1.79}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19632 19632]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00267 R00267]
 +
* PIR:
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A10759 A10759]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A43294 A43294]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A43934 A43934]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A49341 A49341]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A54756 A54756]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A55591 A55591]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B49341 B49341]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C64523 C64523]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C81399 C81399]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=DCBYIS DCBYIS]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=DCECIS DCECIS]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G69330 G69330]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H64389 H64389]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H81877 H81877]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H86708 H86708]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40382 I40382]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40719 I40719]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC4600 JC4600]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S28423 S28423]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S33612 S33612]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S33859 S33859]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S47013 S47013]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S51419 S51419]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S57499 S57499]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S62921 S62921]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S65065 S65065]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S74684 S74684]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04355 T04355]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04356 T04356]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07402 T07402]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T09619 T09619]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T39058 T39058]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T44658 T44658]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T46280 T46280]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P16100 P16100]
 +
** [http://www.uniprot.org/uniprot/P33198 P33198]
 +
** [http://www.uniprot.org/uniprot/P41561 P41561]
 +
** [http://www.uniprot.org/uniprot/P41562 P41562]
 +
** [http://www.uniprot.org/uniprot/P50214 P50214]
 +
** [http://www.uniprot.org/uniprot/P41560 P41560]
 +
** [http://www.uniprot.org/uniprot/P56063 P56063]
 +
** [http://www.uniprot.org/uniprot/Q9PHY3 Q9PHY3]
 +
** [http://www.uniprot.org/uniprot/P21954 P21954]
 +
** [http://www.uniprot.org/uniprot/P08200 P08200]
 +
** [http://www.uniprot.org/uniprot/O29610 O29610]
 +
** [http://www.uniprot.org/uniprot/Q9JUV7 Q9JUV7]
 +
** [http://www.uniprot.org/uniprot/Q9CHQ4 Q9CHQ4]
 +
** [http://www.uniprot.org/uniprot/P39126 P39126]
 +
** [http://www.uniprot.org/uniprot/P50216 P50216]
 +
** [http://www.uniprot.org/uniprot/P50215 P50215]
 +
** [http://www.uniprot.org/uniprot/Q04467 Q04467]
 +
** [http://www.uniprot.org/uniprot/P50217 P50217]
 +
** [http://www.uniprot.org/uniprot/P41939 P41939]
 +
** [http://www.uniprot.org/uniprot/P48735 P48735]
 +
** [http://www.uniprot.org/uniprot/P53982 P53982]
 +
** [http://www.uniprot.org/uniprot/P50218 P50218]
 +
** [http://www.uniprot.org/uniprot/O65853 O65853]
 +
** [http://www.uniprot.org/uniprot/Q40345 Q40345]
 +
** [http://www.uniprot.org/uniprot/O14254 O14254]
 +
** [http://www.uniprot.org/uniprot/O75874 O75874]
 +
</div>
 +
{{#set: direction=reversible}}
 +
{{#set: common-name=isocitrate dehydrogenase}}
 +
{{#set: ec-number=ec-1.1.1.42}}
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=12}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 11:26, 15 January 2021

Reaction ISOCITDEH-RXN

  • direction:
    • reversible
  • common-name:
    • isocitrate dehydrogenase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6549, L-glutamine biosynthesis III:
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-7268, NAD/NADP-NADH/NADPH cytosolic interconversion (yeast):
    • 4 reactions found over 5 reactions in the full pathway
  • P105-PWY, TCA cycle IV (2-oxoglutarate decarboxylase):
    • 10 reactions found over 11 reactions in the full pathway
  • TCA, TCA cycle I (prokaryotic):
    • 9 reactions found over 10 reactions in the full pathway
  • REDCITCYC, TCA cycle VI (Helicobacter):
    • 5 reactions found over 9 reactions in the full pathway
  • PWY-7254, TCA cycle VII (acetate-producers):
    • 7 reactions found over 9 reactions in the full pathway
  • PWY-6969, TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase):
    • 10 reactions found over 12 reactions in the full pathway
  • PWY-5913, partial TCA cycle (obligate autotrophs):
    • 10 reactions found over 11 reactions in the full pathway
  • FERMENTATION-PWY, mixed acid fermentation:
    • 11 reactions found over 16 reactions in the full pathway
  • P23-PWY, reductive TCA cycle I:
    • 9 reactions found over 12 reactions in the full pathway
  • PWY-7124, ethylene biosynthesis V (engineered):
    • 8 reactions found over 8 reactions in the full pathway
  • PWY-6728, methylaspartate cycle:
    • 11 reactions found over 19 reactions in the full pathway

Reconstruction information

External links





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