Difference between revisions of "RXN-4231"

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(Created page with "Category:reaction == Reaction ISOCITDEH-RXN == * direction: ** reversible * common-name: ** isocitrate dehydrogenase * ec-number: ** [http://enzyme.expasy.org/EC/1.1.1.42...")
(Created page with "Category:reaction == Reaction RXN-4231 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/1.14.13 ec-1.14.13] == Reaction formula == * 1 CPD-6...")
 
(One intermediate revision by one other user not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ISOCITDEH-RXN ==
+
== Reaction RXN-4231 ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
−
* common-name:
 
−
** isocitrate dehydrogenase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.1.1.42 ec-1.1.1.42]
+
** [http://enzyme.expasy.org/EC/1.14.13 ec-1.14.13]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[NADP]][c] '''+''' 1 [[THREO-DS-ISO-CITRATE]][c] '''<=>''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[NADPH]][c]
+
* 1 [[CPD-698]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CPD-3945]][c] '''+''' 1 [[NADP]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ08749]]
+
* Gene: [[SJ05072]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[PWY-2582]], brassinosteroid biosynthesis II:
−
* [[PWY-6549]], L-glutamine biosynthesis III:
+
** '''4''' reactions found over '''21''' reactions in the full pathway
−
** '''8''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-7268]], NAD/NADP-NADH/NADPH cytosolic interconversion (yeast):
 
−
** '''4''' reactions found over '''5''' reactions in the full pathway
 
−
* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase):
 
−
** '''10''' reactions found over '''11''' reactions in the full pathway
 
−
* [[TCA]], TCA cycle I (prokaryotic):
 
−
** '''9''' reactions found over '''10''' reactions in the full pathway
 
−
* [[REDCITCYC]], TCA cycle VI (Helicobacter):
 
−
** '''5''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-7254]], TCA cycle VII (acetate-producers):
 
−
** '''7''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase):
 
−
** '''10''' reactions found over '''12''' reactions in the full pathway
 
−
* [[PWY-5913]], partial TCA cycle (obligate autotrophs):
 
−
** '''10''' reactions found over '''11''' reactions in the full pathway
 
−
* [[FERMENTATION-PWY]], mixed acid fermentation:
 
−
** '''11''' reactions found over '''16''' reactions in the full pathway
 
−
* [[P23-PWY]], reductive TCA cycle I:
 
−
** '''9''' reactions found over '''12''' reactions in the full pathway
 
−
* [[PWY-7124]], ethylene biosynthesis V (engineered):
 
−
** '''8''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-6728]], methylaspartate cycle:
 
−
** '''11''' reactions found over '''19''' reactions in the full pathway
 
−
</div>
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR111087
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19632 19632]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00267 R00267]
+
** [http://www.genome.jp/dbget-bin/www_bget?R07452 R07452]
−
* PIR:
+
{{#set: direction=left-to-right}}
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A10759 A10759]
+
{{#set: ec-number=ec-1.14.13}}
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A43294 A43294]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A43934 A43934]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A49341 A49341]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A54756 A54756]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A55591 A55591]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B49341 B49341]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C64523 C64523]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C81399 C81399]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=DCBYIS DCBYIS]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=DCECIS DCECIS]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G69330 G69330]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H64389 H64389]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H81877 H81877]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H86708 H86708]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40382 I40382]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40719 I40719]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC4600 JC4600]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S28423 S28423]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S33612 S33612]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S33859 S33859]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S47013 S47013]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S51419 S51419]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S57499 S57499]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S62921 S62921]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S65065 S65065]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S74684 S74684]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04355 T04355]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04356 T04356]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07402 T07402]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T09619 T09619]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T39058 T39058]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T44658 T44658]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T46280 T46280]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P16100 P16100]
 
−
** [http://www.uniprot.org/uniprot/P33198 P33198]
 
−
** [http://www.uniprot.org/uniprot/P41561 P41561]
 
−
** [http://www.uniprot.org/uniprot/P41562 P41562]
 
−
** [http://www.uniprot.org/uniprot/P50214 P50214]
 
−
** [http://www.uniprot.org/uniprot/P41560 P41560]
 
−
** [http://www.uniprot.org/uniprot/P56063 P56063]
 
−
** [http://www.uniprot.org/uniprot/Q9PHY3 Q9PHY3]
 
−
** [http://www.uniprot.org/uniprot/P21954 P21954]
 
−
** [http://www.uniprot.org/uniprot/P08200 P08200]
 
−
** [http://www.uniprot.org/uniprot/O29610 O29610]
 
−
** [http://www.uniprot.org/uniprot/Q9JUV7 Q9JUV7]
 
−
** [http://www.uniprot.org/uniprot/Q9CHQ4 Q9CHQ4]
 
−
** [http://www.uniprot.org/uniprot/P39126 P39126]
 
−
** [http://www.uniprot.org/uniprot/P50216 P50216]
 
−
** [http://www.uniprot.org/uniprot/P50215 P50215]
 
−
** [http://www.uniprot.org/uniprot/Q04467 Q04467]
 
−
** [http://www.uniprot.org/uniprot/P50217 P50217]
 
−
** [http://www.uniprot.org/uniprot/P41939 P41939]
 
−
** [http://www.uniprot.org/uniprot/P48735 P48735]
 
−
** [http://www.uniprot.org/uniprot/P53982 P53982]
 
−
** [http://www.uniprot.org/uniprot/P50218 P50218]
 
−
** [http://www.uniprot.org/uniprot/O65853 O65853]
 
−
** [http://www.uniprot.org/uniprot/Q40345 Q40345]
 
−
** [http://www.uniprot.org/uniprot/O14254 O14254]
 
−
** [http://www.uniprot.org/uniprot/O75874 O75874]
 
−
</div>
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=isocitrate dehydrogenase}}
 
−
{{#set: ec-number=ec-1.1.1.42}}
 
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=12}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana}}

Latest revision as of 11:23, 18 March 2021

Reaction RXN-4231

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-2582, brassinosteroid biosynthesis II:
    • 4 reactions found over 21 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR111087
  • LIGAND-RXN:





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