Difference between revisions of "RXN-4303"

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(Created page with "Category:reaction == Reaction GPPSYN-RXN == * direction: ** reversible * common-name: ** geranyl diphosphate synthase ** prenyltransferase ** dimethylallyltranstransferase...")
(Created page with "Category:reaction == Reaction GLUTDECARBOX-RXN == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/4.1.1.15 ec-4.1.1.15] == Reaction formula == *...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction GPPSYN-RXN ==
+
== Reaction GLUTDECARBOX-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
−
* common-name:
 
−
** geranyl diphosphate synthase
 
−
** prenyltransferase
 
−
** dimethylallyltranstransferase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.5.1.1 ec-2.5.1.1]
+
** [http://enzyme.expasy.org/EC/4.1.1.15 ec-4.1.1.15]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-4211]][c] '''+''' 1 [[DELTA3-ISOPENTENYL-PP]][c] '''<=>''' 1 [[GERANYL-PP]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[GLT]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[4-AMINO-BUTYRATE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ12405]]
−
* Gene: [[SJ20033]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ18424]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ03479]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ02885]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ10781]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ10418]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ00173]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ17982]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ19255]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ09945]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ18127]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ15410]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ01234]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ07213]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ04802]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ18388]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ18409]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ06255]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ09061]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ10333]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ10346]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ00009]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ20712]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ13532]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[PWY0-1305]], L-glutamate degradation IX (via 4-aminobutanoate):
−
* [[PWY-6383]], mono-trans, poly-cis decaprenyl phosphate biosynthesis:
 
−
** '''2''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-7410]], ipsdienol biosynthesis:
 
−
** '''1''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-7102]], bisabolene biosynthesis (engineered):
 
−
** '''3''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-6859]], all-trans-farnesol biosynthesis:
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-7736]], stellatic acid biosynthesis:
 
−
** '''3''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-5122]], geranyl diphosphate biosynthesis:
 
 
** '''1''' reactions found over '''1''' reactions in the full pathway
 
** '''1''' reactions found over '''1''' reactions in the full pathway
−
* [[PWY-7141]], (3S)-linalool biosynthesis:
+
* [[GLUDEG-I-PWY]], GABA shunt:
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
** '''4''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-7659]], viridicatumtoxin biosynthesis:
+
* [[PWY-4321]], L-glutamate degradation IV:
−
** '''1''' reactions found over '''9''' reactions in the full pathway
+
** '''3''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-7709]], (3R)-linalool biosynthesis:
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-5123]], trans, trans-farnesyl diphosphate biosynthesis:
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-7182]], linalool biosynthesis I:
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
−
</div>
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22408 22408]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17786 17786]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01658 R01658]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00261 R00261]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P08524 P08524]
+
** [http://www.uniprot.org/uniprot/P20228 P20228]
−
** [http://www.uniprot.org/uniprot/P05369 P05369]
+
** [http://www.uniprot.org/uniprot/Q05329 Q05329]
−
** [http://www.uniprot.org/uniprot/P14324 P14324]
+
** [http://www.uniprot.org/uniprot/P18088 P18088]
−
** [http://www.uniprot.org/uniprot/P46376 P46376]
+
** [http://www.uniprot.org/uniprot/P14748 P14748]
−
** [http://www.uniprot.org/uniprot/Q45220 Q45220]
+
** [http://www.uniprot.org/uniprot/Q07346 Q07346]
−
** [http://www.uniprot.org/uniprot/P49350 P49350]
+
** [http://www.uniprot.org/uniprot/Q99259 Q99259]
−
** [http://www.uniprot.org/uniprot/Q50891 Q50891]
+
** [http://www.uniprot.org/uniprot/P69910 P69910]
−
** [http://www.uniprot.org/uniprot/P49349 P49349]
+
** [http://www.uniprot.org/uniprot/Q9CG20 Q9CG20]
−
** [http://www.uniprot.org/uniprot/Q09152 Q09152]
+
** [http://www.uniprot.org/uniprot/P48321 P48321]
−
** [http://www.uniprot.org/uniprot/P49351 P49351]
+
** [http://www.uniprot.org/uniprot/P48319 P48319]
−
** [http://www.uniprot.org/uniprot/P49352 P49352]
+
** [http://www.uniprot.org/uniprot/Q05683 Q05683]
−
** [http://www.uniprot.org/uniprot/Q43315 Q43315]
+
** [http://www.uniprot.org/uniprot/Q24062 Q24062]
−
** [http://www.uniprot.org/uniprot/O24241 O24241]
+
** [http://www.uniprot.org/uniprot/P69908 P69908]
−
** [http://www.uniprot.org/uniprot/O24242 O24242]
+
** [http://www.uniprot.org/uniprot/P48320 P48320]
−
** [http://www.uniprot.org/uniprot/Q92334 Q92334]
+
** [http://www.uniprot.org/uniprot/Q59956 Q59956]
−
** [http://www.uniprot.org/uniprot/Q92218 Q92218]
+
** [http://www.uniprot.org/uniprot/P48318 P48318]
−
** [http://www.uniprot.org/uniprot/Q92235 Q92235]
+
** [http://www.uniprot.org/uniprot/Q49854 Q49854]
−
** [http://www.uniprot.org/uniprot/Q92250 Q92250]
+
** [http://www.uniprot.org/uniprot/Q49855 Q49855]
−
** [http://www.uniprot.org/uniprot/Q8L7F4 Q8L7F4]
+
** [http://www.uniprot.org/uniprot/Q49863 Q49863]
−
** [http://www.uniprot.org/uniprot/P49353 P49353]
+
** [http://www.uniprot.org/uniprot/O81101 O81101]
−
** [http://www.uniprot.org/uniprot/O04882 O04882]
 
−
** [http://www.uniprot.org/uniprot/O65004 O65004]
 
 
</div>
 
</div>
−
{{#set: direction=reversible}}
+
{{#set: direction=left-to-right}}
−
{{#set: common-name=prenyltransferase|dimethylallyltranstransferase|geranyl diphosphate synthase}}
+
{{#set: ec-number=ec-4.1.1.15}}
−
{{#set: ec-number=ec-2.5.1.1}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb gene associated=24}}
+
{{#set: nb pathway associated=3}}
−
{{#set: nb pathway associated=11}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina}}

Revision as of 11:23, 15 January 2021

Reaction GLUTDECARBOX-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY0-1305, L-glutamate degradation IX (via 4-aminobutanoate):
    • 1 reactions found over 1 reactions in the full pathway
  • GLUDEG-I-PWY, GABA shunt:
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-4321, L-glutamate degradation IV:
    • 3 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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