Difference between revisions of "RXN-4307"

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(Created page with "Category:reaction == Reaction SPERMIDINESYN-RXN == * direction: ** reversible * common-name: ** spermidine synthase * ec-number: ** [http://enzyme.expasy.org/EC/2.5.1.16 e...")
(Created page with "Category:reaction == Reaction 3.4.14.5-RXN == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/3.4.14.5 ec-3.4.14.5] == Reaction formula == * 1 [...")
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[[Category:reaction]]
 
[[Category:reaction]]
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== Reaction SPERMIDINESYN-RXN ==
+
== Reaction 3.4.14.5-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
−
* common-name:
 
−
** spermidine synthase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.5.1.16 ec-2.5.1.16]
+
** [http://enzyme.expasy.org/EC/3.4.14.5 ec-3.4.14.5]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[PUTRESCINE]][c] '''+''' 1 [[S-ADENOSYLMETHIONINAMINE]][c] '''<=>''' 1 [[5-METHYLTHIOADENOSINE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[SPERMIDINE]][c]
+
* 1 [[POLYPEPTIDE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[DIPEPTIDES]][c] '''+''' 1 [[Peptides-holder]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ05219]]
+
* Gene: [[SJ12696]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ19088]]
+
* Gene: [[SJ12697]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[BSUBPOLYAMSYN-PWY]], spermidine biosynthesis I:
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12724 12724]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R01920 R01920]
 
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P19623 P19623]
+
** [http://www.uniprot.org/uniprot/P14740 P14740]
−
** [http://www.uniprot.org/uniprot/Q57761 Q57761]
+
** [http://www.uniprot.org/uniprot/P27487 P27487]
−
** [http://www.uniprot.org/uniprot/Q12074 Q12074]
+
** [http://www.uniprot.org/uniprot/P22411 P22411]
−
** [http://www.uniprot.org/uniprot/Q12455 Q12455]
+
** [http://www.uniprot.org/uniprot/Q7M2P2 Q7M2P2]
−
** [http://www.uniprot.org/uniprot/P09158 P09158]
+
{{#set: direction=left-to-right}}
−
** [http://www.uniprot.org/uniprot/O48660 O48660]
+
{{#set: ec-number=ec-3.4.14.5}}
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=spermidine synthase}}
 
−
{{#set: ec-number=ec-2.5.1.16}}
 
 
{{#set: nb gene associated=2}}
 
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=0}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 19:01, 14 January 2021

Reaction 3.4.14.5-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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