Difference between revisions of "RXN-4307"

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(Created page with "Category:reaction == Reaction RXN1G-517 == * direction: ** left-to-right * common-name: ** 3-hydroxylignoceroyl-[acyl-carrier protein] dehydratase * ec-number: ** [http://...")
(Created page with "Category:reaction == Reaction RXN-4307 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/2.5.1.27 ec-2.5.1.27] == Reaction formula == * 1 AMP...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction RXN1G-517 ==
+
== Reaction RXN-4307 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
* common-name:
 
** 3-hydroxylignoceroyl-[acyl-carrier protein] dehydratase
 
 
* ec-number:
 
* ec-number:
** [http://enzyme.expasy.org/EC/4.2.1.59 ec-4.2.1.59]
+
** [http://enzyme.expasy.org/EC/2.5.1.27 ec-2.5.1.27]
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[R-3-hydroxylignoceroyl-ACPs]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[trans-delta2-lignoceroyl-ACPs]][c]
+
* 1 [[AMP]][c] '''+''' 1 [[CPD-4211]][c] '''=>''' 1 [[CPD-4205]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[SJ10275]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
* [[PWYG-321]], mycolate biosynthesis:
+
* [[PWY-2681]], trans-zeatin biosynthesis:
** '''26''' reactions found over '''182''' reactions in the full pathway
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** '''4''' reactions found over '''11''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR108610
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15286 15286]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R04038 R04038]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
{{#set: common-name=3-hydroxylignoceroyl-[acyl-carrier protein] dehydratase}}
+
{{#set: ec-number=ec-2.5.1.27}}
{{#set: ec-number=ec-4.2.1.59}}
+
{{#set: nb gene associated=0}}
{{#set: nb gene associated=1}}
 
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=gap-filling}}
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=meneco}}
{{#set: reconstruction comment=n.a}}
+
{{#set: reconstruction comment=added for gapfilling}}
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}

Latest revision as of 11:19, 18 March 2021

Reaction RXN-4307

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-2681, trans-zeatin biosynthesis:
    • 4 reactions found over 11 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR108610
  • RHEA:
  • LIGAND-RXN: