Difference between revisions of "RXN-4307"

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(Created page with "Category:reaction == Reaction SPERMIDINESYN-RXN == * direction: ** reversible * common-name: ** spermidine synthase * ec-number: ** [http://enzyme.expasy.org/EC/2.5.1.16 e...")
(Created page with "Category:reaction == Reaction RXN-4307 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/2.5.1.27 ec-2.5.1.27] == Reaction formula == * 1 AMP...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction SPERMIDINESYN-RXN ==
+
== Reaction RXN-4307 ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
−
* common-name:
 
−
** spermidine synthase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.5.1.16 ec-2.5.1.16]
+
** [http://enzyme.expasy.org/EC/2.5.1.27 ec-2.5.1.27]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[PUTRESCINE]][c] '''+''' 1 [[S-ADENOSYLMETHIONINAMINE]][c] '''<=>''' 1 [[5-METHYLTHIOADENOSINE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[SPERMIDINE]][c]
+
* 1 [[AMP]][c] '''+''' 1 [[CPD-4211]][c] '''=>''' 1 [[CPD-4205]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ05219]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ19088]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[BSUBPOLYAMSYN-PWY]], spermidine biosynthesis I:
+
* [[PWY-2681]], trans-zeatin biosynthesis:
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''4''' reactions found over '''11''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR108610
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12724 12724]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15286 15286]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01920 R01920]
+
** [http://www.genome.jp/dbget-bin/www_bget?R04038 R04038]
−
* UNIPROT:
+
{{#set: direction=left-to-right}}
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** [http://www.uniprot.org/uniprot/P19623 P19623]
+
{{#set: ec-number=ec-2.5.1.27}}
−
** [http://www.uniprot.org/uniprot/Q57761 Q57761]
+
{{#set: nb gene associated=0}}
−
** [http://www.uniprot.org/uniprot/Q12074 Q12074]
 
−
** [http://www.uniprot.org/uniprot/Q12455 Q12455]
 
−
** [http://www.uniprot.org/uniprot/P09158 P09158]
 
−
** [http://www.uniprot.org/uniprot/O48660 O48660]
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=spermidine synthase}}
 
−
{{#set: ec-number=ec-2.5.1.16}}
 
−
{{#set: nb gene associated=2}}
 
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=gap-filling}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=meneco}}
−
{{#set: reconstruction comment=n.a}}
+
{{#set: reconstruction comment=added for gapfilling}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}

Latest revision as of 11:19, 18 March 2021

Reaction RXN-4307

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-2681, trans-zeatin biosynthesis:
    • 4 reactions found over 11 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR108610
  • RHEA:
  • LIGAND-RXN:





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