Difference between revisions of "RXN-4307"

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(Created page with "Category:reaction == Reaction RXN1G-517 == * direction: ** left-to-right * common-name: ** 3-hydroxylignoceroyl-[acyl-carrier protein] dehydratase * ec-number: ** [http://...")
(Created page with "Category:reaction == Reaction SPERMIDINESYN-RXN == * direction: ** reversible * common-name: ** spermidine synthase * ec-number: ** [http://enzyme.expasy.org/EC/2.5.1.16 e...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN1G-517 ==
+
== Reaction SPERMIDINESYN-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** 3-hydroxylignoceroyl-[acyl-carrier protein] dehydratase
+
** spermidine synthase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.2.1.59 ec-4.2.1.59]
+
** [http://enzyme.expasy.org/EC/2.5.1.16 ec-2.5.1.16]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[R-3-hydroxylignoceroyl-ACPs]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[trans-delta2-lignoceroyl-ACPs]][c]
+
* 1 [[PUTRESCINE]][c] '''+''' 1 [[S-ADENOSYLMETHIONINAMINE]][c] '''<=>''' 1 [[5-METHYLTHIOADENOSINE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[SPERMIDINE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ10275]]
+
* Gene: [[SJ05219]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ19088]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWYG-321]], mycolate biosynthesis:
+
* [[BSUBPOLYAMSYN-PWY]], spermidine biosynthesis I:
−
** '''26''' reactions found over '''182''' reactions in the full pathway
+
** '''2''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
{{#set: direction=left-to-right}}
+
* RHEA:
−
{{#set: common-name=3-hydroxylignoceroyl-[acyl-carrier protein] dehydratase}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12724 12724]
−
{{#set: ec-number=ec-4.2.1.59}}
+
* LIGAND-RXN:
−
{{#set: nb gene associated=1}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R01920 R01920]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P19623 P19623]
 +
** [http://www.uniprot.org/uniprot/Q57761 Q57761]
 +
** [http://www.uniprot.org/uniprot/Q12074 Q12074]
 +
** [http://www.uniprot.org/uniprot/Q12455 Q12455]
 +
** [http://www.uniprot.org/uniprot/P09158 P09158]
 +
** [http://www.uniprot.org/uniprot/O48660 O48660]
 +
{{#set: direction=reversible}}
 +
{{#set: common-name=spermidine synthase}}
 +
{{#set: ec-number=ec-2.5.1.16}}
 +
{{#set: nb gene associated=2}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 13:15, 14 January 2021

Reaction SPERMIDINESYN-RXN

  • direction:
    • reversible
  • common-name:
    • spermidine synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • BSUBPOLYAMSYN-PWY, spermidine biosynthesis I:
    • 2 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





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