Difference between revisions of "RXN-4315-CPD-4207/WATER//CPD0-1108/CPD-4209.35."
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(Created page with "Category:reaction == Reaction RXN-9538 == * direction: ** left-to-right * common-name: ** trans tetradec-2-enoyl-[acyl-carrier-protein] reductase (nadph, b-specific) ** fa...") |
(Created page with "Category:reaction == Reaction DIAMINOPIMDECARB-RXN == * direction: ** left-to-right * common-name: ** diaminopimelate decarboxylase * ec-number: ** [http://enzyme.expasy.o...") |
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[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction RXN | + | == Reaction DIAMINOPIMDECARB-RXN == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
* common-name: | * common-name: | ||
− | ** | + | ** diaminopimelate decarboxylase |
− | |||
− | |||
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/4.1.1.20 ec-4.1.1.20] |
− | |||
− | |||
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== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[MESO-DIAMINOPIMELATE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[LYS]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | + | * Gene: [[SJ09103]] | |
− | * Gene: [[ | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
− | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a |
− | + | ** Category: [[orthology]] | |
− | + | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | |
− | + | * Gene: [[SJ00674]] | |
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− | |||
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− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | ** Category: [[ | ||
− | *** Source: [[ | ||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | * Gene: [[ | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
− | + | ** Category: [[orthology]] | |
− | + | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | |
− | + | * Gene: [[SJ21359]] | |
− | |||
− | |||
− | |||
− | |||
− | ** Category: [[ | ||
− | *** Source: [[ | ||
− | |||
− | |||
− | |||
− | * Gene: [[ | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
− | * | + | ** Category: [[orthology]] |
− | ** | + | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a |
− | *** Source: [[ | + | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a |
− | + | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | |
== Pathway(s) == | == Pathway(s) == | ||
− | * [[PWY- | + | * [[PWY-2942]], L-lysine biosynthesis III: |
− | ** ''' | + | ** '''6''' reactions found over '''7''' reactions in the full pathway |
+ | * [[PWY-5097]], L-lysine biosynthesis VI: | ||
+ | ** '''7''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[DAPLYSINESYN-PWY]], L-lysine biosynthesis I: | ||
+ | ** '''7''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-2941]], L-lysine biosynthesis II: | ||
+ | ** '''6''' reactions found over '''9''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
+ | * METANETX-RXN : MNXR97141 | ||
+ | * RHEA: | ||
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15102 15102] | ||
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R00451 R00451] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/P19572 P19572] | ||
+ | ** [http://www.uniprot.org/uniprot/P0A5M4 P0A5M4] | ||
+ | ** [http://www.uniprot.org/uniprot/P44316 P44316] | ||
+ | ** [http://www.uniprot.org/uniprot/P56129 P56129] | ||
+ | ** [http://www.uniprot.org/uniprot/O67262 O67262] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JWA6 Q9JWA6] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9CG26 Q9CG26] | ||
+ | ** [http://www.uniprot.org/uniprot/P00861 P00861] | ||
+ | ** [http://www.uniprot.org/uniprot/O27390 O27390] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PII5 Q9PII5] | ||
+ | ** [http://www.uniprot.org/uniprot/Q58497 Q58497] | ||
+ | ** [http://www.uniprot.org/uniprot/O29458 O29458] | ||
+ | ** [http://www.uniprot.org/uniprot/P41023 P41023] | ||
+ | ** [http://www.uniprot.org/uniprot/P23630 P23630] | ||
+ | ** [http://www.uniprot.org/uniprot/P09890 P09890] | ||
+ | ** [http://www.uniprot.org/uniprot/Q55484 Q55484] | ||
+ | ** [http://www.uniprot.org/uniprot/O05321 O05321] | ||
+ | </div> | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: common-name= | + | {{#set: common-name=diaminopimelate decarboxylase}} |
− | {{#set: ec-number=ec- | + | {{#set: ec-number=ec-4.1.1.20}} |
− | + | {{#set: nb gene associated=3}} | |
− | {{#set: nb gene associated= | + | {{#set: nb pathway associated=4}} |
− | {{#set: nb pathway associated= | + | {{#set: reconstruction category=orthology|annotation}} |
− | {{#set: reconstruction category=annotation}} | + | {{#set: reconstruction tool=pantograph|pathwaytools}} |
− | {{#set: reconstruction tool=pathwaytools}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=saccharina_japonica_genome}} | + | {{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina|saccharina_japonica_genome}} |
Revision as of 08:36, 15 March 2021
Contents
Reaction DIAMINOPIMDECARB-RXN
- direction:
- left-to-right
- common-name:
- diaminopimelate decarboxylase
- ec-number:
Reaction formula
- 1 MESO-DIAMINOPIMELATE[c] + 1 PROTON[c] => 1 CARBON-DIOXIDE[c] + 1 LYS[c]
Gene(s) associated with this reaction
- Gene: SJ09103
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ00674
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ21359
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-2942, L-lysine biosynthesis III:
- 6 reactions found over 7 reactions in the full pathway
- PWY-5097, L-lysine biosynthesis VI:
- 7 reactions found over 7 reactions in the full pathway
- DAPLYSINESYN-PWY, L-lysine biosynthesis I:
- 7 reactions found over 9 reactions in the full pathway
- PWY-2941, L-lysine biosynthesis II:
- 6 reactions found over 9 reactions in the full pathway
Reconstruction information
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
External links