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| | [[Category:reaction]] | | [[Category:reaction]] |
| − | == Reaction DIAMINOPIMDECARB-RXN == | + | == Reaction RXN-4315-CPD-4207/WATER//CPD0-1108/CPD-4209.35. == |
| | * direction: | | * direction: |
| − | ** left-to-right | + | ** reversible |
| − | * common-name:
| |
| − | ** diaminopimelate decarboxylase
| |
| − | * ec-number:
| |
| − | ** [http://enzyme.expasy.org/EC/4.1.1.20 ec-4.1.1.20]
| |
| | == Reaction formula == | | == Reaction formula == |
| − | * 1 [[MESO-DIAMINOPIMELATE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[LYS]][c] | + | * 1.0 [[CPD-4207]][c] '''+''' 1.0 [[WATER]][c] '''<=>''' 1.0 [[CPD-4209]][c] '''+''' 1.0 [[CPD0-1108]][c] |
| | == Gene(s) associated with this reaction == | | == Gene(s) associated with this reaction == |
| − | * Gene: [[SJ09103]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| − | ** Category: [[orthology]]
| |
| − | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | * Gene: [[SJ00674]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| − | ** Category: [[orthology]]
| |
| − | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | * Gene: [[SJ21359]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| − | ** Category: [[orthology]]
| |
| − | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| | == Pathway(s) == | | == Pathway(s) == |
| − | * [[PWY-2942]], L-lysine biosynthesis III:
| |
| − | ** '''6''' reactions found over '''7''' reactions in the full pathway
| |
| − | * [[PWY-5097]], L-lysine biosynthesis VI:
| |
| − | ** '''7''' reactions found over '''7''' reactions in the full pathway
| |
| − | * [[DAPLYSINESYN-PWY]], L-lysine biosynthesis I:
| |
| − | ** '''7''' reactions found over '''9''' reactions in the full pathway
| |
| − | * [[PWY-2941]], L-lysine biosynthesis II:
| |
| − | ** '''6''' reactions found over '''9''' reactions in the full pathway
| |
| | == Reconstruction information == | | == Reconstruction information == |
| − | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | + | * category: [[manual]]; source: [[previous_meneco]]; tool: [[curation]]; comment: reaction added with meneco (previous version) |
| − | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
| |
| − | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
| |
| − | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
| |
| | == External links == | | == External links == |
| − | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
| + | {{#set: direction=reversible}} |
| − | * METANETX-RXN : MNXR97141
| + | {{#set: nb gene associated=0}} |
| − | * RHEA:
| + | {{#set: nb pathway associated=0}} |
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15102 15102]
| + | {{#set: reconstruction category=manual}} |
| − | * LIGAND-RXN:
| + | {{#set: reconstruction tool=curation}} |
| − | ** [http://www.genome.jp/dbget-bin/www_bget?R00451 R00451]
| + | {{#set: reconstruction comment=reaction added with meneco (previous version)}} |
| − | * UNIPROT:
| + | {{#set: reconstruction source=previous_meneco}} |
| − | ** [http://www.uniprot.org/uniprot/P19572 P19572]
| |
| − | ** [http://www.uniprot.org/uniprot/P0A5M4 P0A5M4]
| |
| − | ** [http://www.uniprot.org/uniprot/P44316 P44316]
| |
| − | ** [http://www.uniprot.org/uniprot/P56129 P56129]
| |
| − | ** [http://www.uniprot.org/uniprot/O67262 O67262]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9JWA6 Q9JWA6]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9CG26 Q9CG26]
| |
| − | ** [http://www.uniprot.org/uniprot/P00861 P00861]
| |
| − | ** [http://www.uniprot.org/uniprot/O27390 O27390]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9PII5 Q9PII5]
| |
| − | ** [http://www.uniprot.org/uniprot/Q58497 Q58497]
| |
| − | ** [http://www.uniprot.org/uniprot/O29458 O29458]
| |
| − | ** [http://www.uniprot.org/uniprot/P41023 P41023]
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| − | ** [http://www.uniprot.org/uniprot/P23630 P23630]
| |
| − | ** [http://www.uniprot.org/uniprot/P09890 P09890]
| |
| − | ** [http://www.uniprot.org/uniprot/Q55484 Q55484]
| |
| − | ** [http://www.uniprot.org/uniprot/O05321 O05321]
| |
| − | </div>
| |
| − | {{#set: direction=left-to-right}} | |
| − | {{#set: common-name=diaminopimelate decarboxylase}}
| |
| − | {{#set: ec-number=ec-4.1.1.20}}
| |
| − | {{#set: nb gene associated=3}} | |
| − | {{#set: nb pathway associated=4}} | |
| − | {{#set: reconstruction category=orthology|annotation}} | |
| − | {{#set: reconstruction tool=pantograph|pathwaytools}} | |
| − | {{#set: reconstruction comment=n.a}} | |
| − | {{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina|saccharina_japonica_genome}} | |
