Difference between revisions of "RXN-5286"

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(Created page with "Category:reaction == Reaction ENOYL-ACP-REDUCT-NADPH-RXN == * direction: ** left-to-right * common-name: ** 2,3,4-saturated fatty acyl-[acp] dehydrogenase ** fatty acid sy...")
(Created page with "Category:reaction == Reaction RXN-5286 == * direction: ** left-to-right * common-name: ** 3,8-divinyl-chlorophyllide 8-vinyl reductase * ec-number: ** [http://enzyme.expas...")
 
(One intermediate revision by the same user not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ENOYL-ACP-REDUCT-NADPH-RXN ==
+
== Reaction RXN-5286 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** 2,3,4-saturated fatty acyl-[acp] dehydrogenase
+
** 3,8-divinyl-chlorophyllide 8-vinyl reductase
−
** fatty acid synthase
 
−
** 2,3,4-saturated-fatty-acid-[acp] reductase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.3.1.39 ec-1.3.1.39]
+
** [http://enzyme.expasy.org/EC/1.3.1.75 ec-1.3.1.75]
−
** [http://enzyme.expasy.org/EC/1.3.1.104 ec-1.3.1.104]
 
−
** [http://enzyme.expasy.org/EC/2.3.1.86 ec-2.3.1.86]
 
−
** [http://enzyme.expasy.org/EC/2.3.1.85 ec-2.3.1.85]
 
−
** [http://enzyme.expasy.org/EC/1.3.1.10 ec-1.3.1.10]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[TRANS-D2-ENOYL-ACP]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[Saturated-Fatty-Acyl-ACPs]][c]
+
* 1 [[DIVINYLCHLOROPHYLLIDE-A]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CHLOROPHYLLIDE-A]][c] '''+''' 1 [[NADP]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ12431]]
−
* Gene: [[SJ11672]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ04769]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ06616]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ10624]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ04443]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ06944]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ17743]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ15983]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ00320]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ13014]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ19629]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ03883]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ00613]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ18059]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ06617]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[FASYN-ELONG-PWY]], fatty acid elongation -- saturated:
+
* [[PWY-5086]], chlorophyll a biosynthesis I:
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-7760]], bacteriochlorophyll e biosynthesis:
 +
** '''1''' reactions found over '''30''' reactions in the full pathway
 +
* [[PWY-7758]], bacteriochlorophyll d biosynthesis:
 +
** '''1''' reactions found over '''14''' reactions in the full pathway
 +
* [[PWY-7759]], bacteriochlorophyll c biosynthesis:
 +
** '''1''' reactions found over '''18''' reactions in the full pathway
 +
* [[PWY-5064]], chlorophyll a biosynthesis II:
 
** '''5''' reactions found over '''5''' reactions in the full pathway
 
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-5526]], bacteriochlorophyll a biosynthesis:
 +
** '''5''' reactions found over '''13''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR97824
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22566 22566]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14451 14451]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01404 R01404]
+
** [http://www.genome.jp/dbget-bin/www_bget?R06272 R06272]
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P49327 P49327]
 
−
** [http://www.uniprot.org/uniprot/P12276 P12276]
 
−
** [http://www.uniprot.org/uniprot/P12785 P12785]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=fatty acid synthase|2,3,4-saturated-fatty-acid-[acp] reductase|2,3,4-saturated fatty acyl-[acp] dehydrogenase}}
+
{{#set: common-name=3,8-divinyl-chlorophyllide 8-vinyl reductase}}
−
{{#set: ec-number=ec-1.3.1.104|ec-2.3.1.85|ec-1.3.1.39|ec-2.3.1.86|ec-1.3.1.10}}
+
{{#set: ec-number=ec-1.3.1.75}}
−
{{#set: nb gene associated=15}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=6}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome}}

Latest revision as of 11:21, 18 March 2021

Reaction RXN-5286

  • direction:
    • left-to-right
  • common-name:
    • 3,8-divinyl-chlorophyllide 8-vinyl reductase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5086, chlorophyll a biosynthesis I:
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-7760, bacteriochlorophyll e biosynthesis:
    • 1 reactions found over 30 reactions in the full pathway
  • PWY-7758, bacteriochlorophyll d biosynthesis:
    • 1 reactions found over 14 reactions in the full pathway
  • PWY-7759, bacteriochlorophyll c biosynthesis:
    • 1 reactions found over 18 reactions in the full pathway
  • PWY-5064, chlorophyll a biosynthesis II:
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-5526, bacteriochlorophyll a biosynthesis:
    • 5 reactions found over 13 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR97824
  • RHEA:
  • LIGAND-RXN:





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