Difference between revisions of "RXN-5424"

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(Created page with "Category:reaction == Reaction RXN-9537 == * direction: ** left-to-right * common-name: ** fatty acid synthase ** (3r)-3-hydroxymyristoyl-[acyl-carrier protein] dehydratase...")
(Created page with "Category:reaction == Reaction DNA-CYTOSINE-5--METHYLTRANSFERASE-RXN == * direction: ** left-to-right * common-name: ** dna (cytosine-5-)-methyltransferase * ec-number: **...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-9537 ==
+
== Reaction DNA-CYTOSINE-5--METHYLTRANSFERASE-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** fatty acid synthase
+
** dna (cytosine-5-)-methyltransferase
−
** (3r)-3-hydroxymyristoyl-[acyl-carrier protein] dehydratase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.3.1.86 ec-2.3.1.86]
+
** [http://enzyme.expasy.org/EC/2.1.1.37 ec-2.1.1.37]
−
** [http://enzyme.expasy.org/EC/2.3.1.85 ec-2.3.1.85]
 
−
** [http://enzyme.expasy.org/EC/4.2.1.59 ec-4.2.1.59]
 
−
* synonymous:
 
−
** (3r)-hydroxymyristoyl-acp dehydratase
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[R-3-hydroxymyristoyl-ACPs]][c] '''=>''' 1 [[Tetradec-2-enoyl-ACPs]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[DNA-Cytosines]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[5-Methylcytosine-DNA]][c] '''+''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* Gene: [[SJ17743]]
+
* Gene: [[SJ03848]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ13014]]
+
* Gene: [[SJ22261]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ04443]]
+
* Gene: [[SJ09533]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ00613]]
+
* Gene: [[SJ00246]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ04769]]
+
* Gene: [[SJ02225]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ03883]]
+
* Gene: [[SJ11154]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ19629]]
+
* Gene: [[SJ03795]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ18059]]
+
* Gene: [[SJ00150]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ06617]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ11672]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ00320]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ10624]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ06944]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ06616]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ15983]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ10275]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
</div>
 
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5994]], palmitate biosynthesis (animals and fungi, cytoplasm):
 
−
** '''31''' reactions found over '''31''' reactions in the full pathway
 
−
* [[PWY-5971]], palmitate biosynthesis II (bacteria and plant cytoplasm):
 
−
** '''31''' reactions found over '''31''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13682 13682]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P24581 P24581]
 +
** [http://www.uniprot.org/uniprot/P05102 P05102]
 +
** [http://www.uniprot.org/uniprot/P05101 P05101]
 +
** [http://www.uniprot.org/uniprot/P06530 P06530]
 +
** [http://www.uniprot.org/uniprot/O41165 O41165]
 +
** [http://www.uniprot.org/uniprot/Q98580 Q98580]
 +
** [http://www.uniprot.org/uniprot/Q98567 Q98567]
 +
** [http://www.uniprot.org/uniprot/Q59606 Q59606]
 +
** [http://www.uniprot.org/uniprot/P0A462 P0A462]
 +
** [http://www.uniprot.org/uniprot/P71101 P71101]
 +
** [http://www.uniprot.org/uniprot/P50192 P50192]
 +
** [http://www.uniprot.org/uniprot/P50185 P50185]
 +
** [http://www.uniprot.org/uniprot/Q38652 Q38652]
 +
** [http://www.uniprot.org/uniprot/P52311 P52311]
 +
** [http://www.uniprot.org/uniprot/P31974 P31974]
 +
** [http://www.uniprot.org/uniprot/P30774 P30774]
 +
** [http://www.uniprot.org/uniprot/P23941 P23941]
 +
** [http://www.uniprot.org/uniprot/P25262 P25262]
 +
** [http://www.uniprot.org/uniprot/P25267 P25267]
 +
** [http://www.uniprot.org/uniprot/P25263 P25263]
 +
** [http://www.uniprot.org/uniprot/P15446 P15446]
 +
** [http://www.uniprot.org/uniprot/P24600 P24600]
 +
** [http://www.uniprot.org/uniprot/P23737 P23737]
 +
** [http://www.uniprot.org/uniprot/P13906 P13906]
 +
** [http://www.uniprot.org/uniprot/P14243 P14243]
 +
** [http://www.uniprot.org/uniprot/P14244 P14244]
 +
** [http://www.uniprot.org/uniprot/P14230 P14230]
 +
** [http://www.uniprot.org/uniprot/P11409 P11409]
 +
** [http://www.uniprot.org/uniprot/P10283 P10283]
 +
** [http://www.uniprot.org/uniprot/P25265 P25265]
 +
** [http://www.uniprot.org/uniprot/P0AED9 P0AED9]
 +
** [http://www.uniprot.org/uniprot/P20589 P20589]
 +
** [http://www.uniprot.org/uniprot/Q02778 Q02778]
 +
** [http://www.uniprot.org/uniprot/P95820 P95820]
 +
** [http://www.uniprot.org/uniprot/P70750 P70750]
 +
** [http://www.uniprot.org/uniprot/P25264 P25264]
 +
** [http://www.uniprot.org/uniprot/Q47257 Q47257]
 +
** [http://www.uniprot.org/uniprot/O87740 O87740]
 +
** [http://www.uniprot.org/uniprot/P43420 P43420]
 +
** [http://www.uniprot.org/uniprot/Q9JWD8 Q9JWD8]
 +
** [http://www.uniprot.org/uniprot/Q9JU80 Q9JU80]
 +
** [http://www.uniprot.org/uniprot/P08455 P08455]
 +
** [http://www.uniprot.org/uniprot/P11408 P11408]
 +
** [http://www.uniprot.org/uniprot/P17044 P17044]
 +
** [http://www.uniprot.org/uniprot/P19888 P19888]
 +
** [http://www.uniprot.org/uniprot/P00476 P00476]
 +
** [http://www.uniprot.org/uniprot/P09915 P09915]
 +
** [http://www.uniprot.org/uniprot/P68586 P68586]
 +
** [http://www.uniprot.org/uniprot/Q9ZLZ0 Q9ZLZ0]
 +
** [http://www.uniprot.org/uniprot/O24892 O24892]
 +
** [http://www.uniprot.org/uniprot/P45000 P45000]
 +
** [http://www.uniprot.org/uniprot/P29567 P29567]
 +
** [http://www.uniprot.org/uniprot/P25282 P25282]
 +
** [http://www.uniprot.org/uniprot/Q9JQR8 Q9JQR8]
 +
** [http://www.uniprot.org/uniprot/O25746 O25746]
 +
** [http://www.uniprot.org/uniprot/P36216 P36216]
 +
** [http://www.uniprot.org/uniprot/P25283 P25283]
 +
** [http://www.uniprot.org/uniprot/O23273 O23273]
 +
** [http://www.uniprot.org/uniprot/Q92072 Q92072]
 +
** [http://www.uniprot.org/uniprot/P79922 P79922]
 +
** [http://www.uniprot.org/uniprot/O08431 O08431]
 +
** [http://www.uniprot.org/uniprot/Q9Z330 Q9Z330]
 +
** [http://www.uniprot.org/uniprot/P13864 P13864]
 +
** [http://www.uniprot.org/uniprot/Q9S9I8 Q9S9I8]
 +
** [http://www.uniprot.org/uniprot/P34881 P34881]
 +
** [http://www.uniprot.org/uniprot/Q60171 Q60171]
 +
** [http://www.uniprot.org/uniprot/O65343 O65343]
 +
** [http://www.uniprot.org/uniprot/O49022 O49022]
 +
** [http://www.uniprot.org/uniprot/Q9T0I1 Q9T0I1]
 +
** [http://www.uniprot.org/uniprot/O49889 O49889]
 +
** [http://www.uniprot.org/uniprot/O42731 O42731]
 +
** [http://www.uniprot.org/uniprot/O48866 O48866]
 +
** [http://www.uniprot.org/uniprot/O48867 O48867]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00380 R00380]
 +
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=fatty acid synthase|(3r)-3-hydroxymyristoyl-[acyl-carrier protein] dehydratase}}
+
{{#set: common-name=dna (cytosine-5-)-methyltransferase}}
−
{{#set: ec-number=ec-4.2.1.59|ec-2.3.1.86|ec-2.3.1.85}}
+
{{#set: ec-number=ec-2.1.1.37}}
−
{{#set: synonymous=(3r)-hydroxymyristoyl-acp dehydratase}}
+
{{#set: nb gene associated=8}}
−
{{#set: nb gene associated=16}}
+
{{#set: nb pathway associated=0}}
−
{{#set: nb pathway associated=2}}
 
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 13:17, 14 January 2021

Reaction DNA-CYTOSINE-5--METHYLTRANSFERASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • dna (cytosine-5-)-methyltransferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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