Difference between revisions of "RXN-5462"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DGOTO DGOTO] == * direction: ** left-to-right * common-name: ** 2'-deoxyguanosine 5'-diphosphate:ox...")
 
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=AIRS-RXN AIRS-RXN] == * direction: ** left-to-right * common-name: ** phosphoribosylformylglycinami...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DGOTO DGOTO] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=AIRS-RXN AIRS-RXN] ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** 2'-deoxyguanosine 5'-diphosphate:oxidized-thioredoxin 2'-oxidoreductase
+
** phosphoribosylformylglycinamide cyclo-ligase
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/6.3.3.1 ec-6.3.3.1]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1.0 [[GDP]][c] '''+''' 1.0 [[Red-Thioredoxin]][c] '''=>''' 1.0 [[DGDP]][c] '''+''' 1.0 [[Ox-Thioredoxin]][c] '''+''' 1.0 [[WATER]][c]
+
* 1 [[5-PHOSPHORIBOSYL-N-FORMYLGLYCINEAMIDINE]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[5-PHOSPHORIBOSYL-5-AMINOIMIDAZOLE]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ17066]]
+
* Gene: [[SJ06408]]
−
** Category: [[orthology]]
+
** Category: [[annotation]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-6277]], superpathway of 5-aminoimidazole ribonucleotide biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6277 PWY-6277]
 +
** '''6''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6121]], 5-aminoimidazole ribonucleotide biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6121 PWY-6121]
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6122]], 5-aminoimidazole ribonucleotide biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6122 PWY-6122]
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23033 23033]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R04208 R04208]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P07244 P07244]
 +
** [http://www.uniprot.org/uniprot/P12043 P12043]
 +
** [http://www.uniprot.org/uniprot/P21872 P21872]
 +
** [http://www.uniprot.org/uniprot/P08178 P08178]
 +
** [http://www.uniprot.org/uniprot/P00967 P00967]
 +
** [http://www.uniprot.org/uniprot/P16340 P16340]
 +
** [http://www.uniprot.org/uniprot/P22102 P22102]
 +
** [http://www.uniprot.org/uniprot/Q57656 Q57656]
 +
** [http://www.uniprot.org/uniprot/O66968 O66968]
 +
** [http://www.uniprot.org/uniprot/Q9JUA2 Q9JUA2]
 +
** [http://www.uniprot.org/uniprot/P43848 P43848]
 +
** [http://www.uniprot.org/uniprot/Q9PME0 Q9PME0]
 +
** [http://www.uniprot.org/uniprot/Q64737 Q64737]
 +
** [http://www.uniprot.org/uniprot/P20772 P20772]
 +
** [http://www.uniprot.org/uniprot/Q55422 Q55422]
 +
** [http://www.uniprot.org/uniprot/P52424 P52424]
 +
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=2'-deoxyguanosine 5'-diphosphate:oxidized-thioredoxin 2'-oxidoreductase}}
+
{{#set: common-name=phosphoribosylformylglycinamide cyclo-ligase}}
 +
{{#set: ec-number=ec-6.3.3.1}}
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=3}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 14:26, 26 August 2019

Reaction AIRS-RXN

  • direction:
    • left-to-right
  • common-name:
    • phosphoribosylformylglycinamide cyclo-ligase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6277, superpathway of 5-aminoimidazole ribonucleotide biosynthesis: PWY-6277
    • 6 reactions found over 5 reactions in the full pathway
  • PWY-6121, 5-aminoimidazole ribonucleotide biosynthesis I: PWY-6121
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-6122, 5-aminoimidazole ribonucleotide biosynthesis II: PWY-6122
    • 4 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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