Difference between revisions of "RXN-5462"

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(Created page with "Category:reaction == Reaction ADENYL-KIN-RXN == * direction: ** left-to-right * common-name: ** adenylate kinase * ec-number: ** [http://enzyme.expasy.org/EC/2.7.4.3 ec-2....")
(Created page with "Category:reaction == Reaction RXN4FS-13 == * direction: ** left-to-right * common-name: ** gdp-galactose:glucose-1-phosphate guanylyltransferase == Reaction formula == * 1...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ADENYL-KIN-RXN ==
+
== Reaction RXN4FS-13 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** adenylate kinase
+
** gdp-galactose:glucose-1-phosphate guanylyltransferase
−
* ec-number:
 
−
** [http://enzyme.expasy.org/EC/2.7.4.3 ec-2.7.4.3]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[AMP]][c] '''+''' 1 [[ATP]][c] '''=>''' 2 [[ADP]][c]
+
* 1 [[GDP-L-GALACTOSE]][c] '''+''' 1 [[GLC-1-P]][c] '''=>''' 1 [[CPDQT-4]][c] '''+''' 1 [[GDP-D-GLUCOSE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ18078]]
−
* Gene: [[SJ12510]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ13446]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ01032]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ04502]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ18341]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ21099]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ21967]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ08159]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ20076]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ13448]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ12499]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ04989]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ10682]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ14895]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ02240]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ00789]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ15367]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ00793]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ08980]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7219]], adenosine ribonucleotides de novo biosynthesis:
+
* [[PWY4FS-13]], extended VTC2 cycle:
−
** '''4''' reactions found over '''3''' reactions in the full pathway
+
** '''2''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12973 12973]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00127 R00127]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P05081 P05081]
 
−
** [http://www.uniprot.org/uniprot/P20425 P20425]
 
−
** [http://www.uniprot.org/uniprot/P08166 P08166]
 
−
** [http://www.uniprot.org/uniprot/P38372 P38372]
 
−
** [http://www.uniprot.org/uniprot/O27699 O27699]
 
−
** [http://www.uniprot.org/uniprot/O29581 O29581]
 
−
** [http://www.uniprot.org/uniprot/O59443 O59443]
 
−
** [http://www.uniprot.org/uniprot/Q9YDD2 Q9YDD2]
 
−
** [http://www.uniprot.org/uniprot/Q9UZN1 Q9UZN1]
 
−
** [http://www.uniprot.org/uniprot/P58117 P58117]
 
−
** [http://www.uniprot.org/uniprot/Q9PHM8 Q9PHM8]
 
−
** [http://www.uniprot.org/uniprot/P54819 P54819]
 
−
** [http://www.uniprot.org/uniprot/O66490 O66490]
 
−
** [http://www.uniprot.org/uniprot/Q9V1V9 Q9V1V9]
 
−
** [http://www.uniprot.org/uniprot/P49973 P49973]
 
−
** [http://www.uniprot.org/uniprot/P24323 P24323]
 
−
** [http://www.uniprot.org/uniprot/P47417 P47417]
 
−
** [http://www.uniprot.org/uniprot/Q9HPA7 Q9HPA7]
 
−
** [http://www.uniprot.org/uniprot/P29410 P29410]
 
−
** [http://www.uniprot.org/uniprot/P16304 P16304]
 
−
** [http://www.uniprot.org/uniprot/P00570 P00570]
 
−
** [http://www.uniprot.org/uniprot/P27142 P27142]
 
−
** [http://www.uniprot.org/uniprot/P07170 P07170]
 
−
** [http://www.uniprot.org/uniprot/P12115 P12115]
 
−
** [http://www.uniprot.org/uniprot/P69441 P69441]
 
−
** [http://www.uniprot.org/uniprot/P00568 P00568]
 
−
** [http://www.uniprot.org/uniprot/P10772 P10772]
 
−
** [http://www.uniprot.org/uniprot/P00571 P00571]
 
−
** [http://www.uniprot.org/uniprot/P00569 P00569]
 
−
** [http://www.uniprot.org/uniprot/P10251 P10251]
 
−
** [http://www.uniprot.org/uniprot/P43417 P43417]
 
−
** [http://www.uniprot.org/uniprot/P49974 P49974]
 
−
** [http://www.uniprot.org/uniprot/P33107 P33107]
 
−
** [http://www.uniprot.org/uniprot/P27143 P27143]
 
−
** [http://www.uniprot.org/uniprot/P26364 P26364]
 
−
** [http://www.uniprot.org/uniprot/P33075 P33075]
 
−
** [http://www.uniprot.org/uniprot/P35140 P35140]
 
−
** [http://www.uniprot.org/uniprot/P35141 P35141]
 
−
** [http://www.uniprot.org/uniprot/P39068 P39068]
 
−
** [http://www.uniprot.org/uniprot/P34346 P34346]
 
−
** [http://www.uniprot.org/uniprot/P43188 P43188]
 
−
** [http://www.uniprot.org/uniprot/P69344 P69344]
 
−
** [http://www.uniprot.org/uniprot/P0A0U6 P0A0U6]
 
−
** [http://www.uniprot.org/uniprot/P49979 P49979]
 
−
** [http://www.uniprot.org/uniprot/Q50299 Q50299]
 
−
** [http://www.uniprot.org/uniprot/P43412 P43412]
 
−
** [http://www.uniprot.org/uniprot/P72641 P72641]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=adenylate kinase}}
+
{{#set: common-name=gdp-galactose:glucose-1-phosphate guanylyltransferase}}
−
{{#set: ec-number=ec-2.7.4.3}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb gene associated=19}}
 
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 15:32, 5 January 2021

Reaction RXN4FS-13

  • direction:
    • left-to-right
  • common-name:
    • gdp-galactose:glucose-1-phosphate guanylyltransferase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY4FS-13, extended VTC2 cycle:
    • 2 reactions found over 3 reactions in the full pathway

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-5462&oldid=75662"