Difference between revisions of "RXN-5469"

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(Created page with "Category:reaction == Reaction RXN0-1147 == * direction: ** reversible * common-name: ** dihydrolipoyltranssuccinylase * ec-number: ** [http://enzyme.expasy.org/EC/2.3.1.61...")
(Created page with "Category:reaction == Reaction RXN-13307 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/1.3.1.93 ec-1.3.1.93] == Reaction formula == * 1 CP...")
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[[Category:reaction]]
 
[[Category:reaction]]
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== Reaction RXN0-1147 ==
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== Reaction RXN-13307 ==
 
* direction:
 
* direction:
−
** reversible
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** left-to-right
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* common-name:
 
−
** dihydrolipoyltranssuccinylase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.3.1.61 ec-2.3.1.61]
+
** [http://enzyme.expasy.org/EC/1.3.1.93 ec-1.3.1.93]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[Oxo-glutarate-dehydrogenase-DH-lipoyl]][c] '''+''' 1 [[SUC-COA]][c] '''<=>''' 1 [[CO-A]][c] '''+''' 1 [[Oxo-glutarate-dehydro-suc-DH-lipoyl]][c]
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* 1 [[CPD-14281]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CPD-10279]][c] '''+''' 1 [[NADP]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ02117]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[SJ19201]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[SJ13629]]
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ06474]]
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
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* [[PWY-5084]], 2-oxoglutarate decarboxylation to succinyl-CoA:
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* [[PWY-7036]], very long chain fatty acid biosynthesis II:
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** '''3''' reactions found over '''3''' reactions in the full pathway
+
** '''14''' reactions found over '''16''' reactions in the full pathway
−
* [[PWY66-398]], TCA cycle III (animals):
 
−
** '''10''' reactions found over '''10''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: direction=left-to-right}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02570 R02570]
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{{#set: ec-number=ec-1.3.1.93}}
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{{#set: direction=reversible}}
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{{#set: nb gene associated=0}}
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{{#set: common-name=dihydrolipoyltranssuccinylase}}
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{{#set: nb pathway associated=1}}
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{{#set: ec-number=ec-2.3.1.61}}
+
{{#set: reconstruction category=gap-filling}}
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{{#set: nb gene associated=4}}
+
{{#set: reconstruction tool=meneco}}
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{{#set: nb pathway associated=2}}
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{{#set: reconstruction comment=added for gapfilling}}
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{{#set: reconstruction category=annotation|orthology}}
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{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}
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{{#set: reconstruction tool=pathwaytools|pantograph}}
 
−
{{#set: reconstruction comment=n.a}}
 
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 

Revision as of 19:04, 14 January 2021

Reaction RXN-13307

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7036, very long chain fatty acid biosynthesis II:
    • 14 reactions found over 16 reactions in the full pathway

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-5469&oldid=102878"