Difference between revisions of "RXN-5581"
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(Created page with "Category:reaction == Reaction RXN-13684 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/3.5.1.14 ec-3.5.1.14] ** [http://enzyme.expasy.org/EC...") |
(Created page with "Category:reaction == Reaction METHIONINE--TRNA-LIGASE-RXN == * direction: ** left-to-right * common-name: ** methionine-trna ligase * ec-number: ** [http://enzyme.expasy.o...") |
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Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction RXN | + | == Reaction METHIONINE--TRNA-LIGASE-RXN == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
+ | * common-name: | ||
+ | ** methionine-trna ligase | ||
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/6.1.1.10 ec-6.1.1.10] |
− | |||
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[ATP]][c] '''+''' 1 [[Elongation-tRNAMet]][c] '''+''' 1 [[MET]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-MET-tRNAs]][c] '''+''' 1 [[PPI]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
+ | * Gene: [[SJ10034]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
− | * Gene: [[ | + | ** Category: [[orthology]] |
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ03581]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | * Gene: [[SJ14459]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | * Gene: [[SJ21346]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ04411]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | * Gene: [[SJ10455]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | * Gene: [[SJ15542]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | </div> | ||
== Pathway(s) == | == Pathway(s) == | ||
+ | * [[TRNA-CHARGING-PWY]], tRNA charging: | ||
+ | ** '''21''' reactions found over '''21''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
== External links == | == External links == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
+ | * RHEA: | ||
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13482 13482] | ||
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R03659 R03659] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/P56127 P56127] | ||
+ | ** [http://www.uniprot.org/uniprot/Q44951 Q44951] | ||
+ | ** [http://www.uniprot.org/uniprot/P47267 P47267] | ||
+ | ** [http://www.uniprot.org/uniprot/O84035 O84035] | ||
+ | ** [http://www.uniprot.org/uniprot/O28819 O28819] | ||
+ | ** [http://www.uniprot.org/uniprot/O58721 O58721] | ||
+ | ** [http://www.uniprot.org/uniprot/O83776 O83776] | ||
+ | ** [http://www.uniprot.org/uniprot/O33925 O33925] | ||
+ | ** [http://www.uniprot.org/uniprot/Q58659 Q58659] | ||
+ | ** [http://www.uniprot.org/uniprot/O66738 O66738] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9ZCP0 Q9ZCP0] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PP85 Q9PP85] | ||
+ | ** [http://www.uniprot.org/uniprot/O26687 O26687] | ||
+ | ** [http://www.uniprot.org/uniprot/O67298 O67298] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JWP0 Q9JWP0] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9ZKG9 Q9ZKG9] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9Z959 Q9Z959] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9CHE0 Q9CHE0] | ||
+ | ** [http://www.uniprot.org/uniprot/P43828 P43828] | ||
+ | ** [http://www.uniprot.org/uniprot/P56192 P56192] | ||
+ | ** [http://www.uniprot.org/uniprot/Q50319 Q50319] | ||
+ | ** [http://www.uniprot.org/uniprot/P23920 P23920] | ||
+ | ** [http://www.uniprot.org/uniprot/P75091 P75091] | ||
+ | ** [http://www.uniprot.org/uniprot/Q55729 Q55729] | ||
+ | ** [http://www.uniprot.org/uniprot/P22438 P22438] | ||
+ | ** [http://www.uniprot.org/uniprot/P00958 P00958] | ||
+ | ** [http://www.uniprot.org/uniprot/P00959 P00959] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9M2T9 Q9M2T9] | ||
+ | ** [http://www.uniprot.org/uniprot/O23761 O23761] | ||
+ | </div> | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: ec-number=ec- | + | {{#set: common-name=methionine-trna ligase}} |
− | {{#set: nb gene associated= | + | {{#set: ec-number=ec-6.1.1.10}} |
− | {{#set: nb pathway associated= | + | {{#set: nb gene associated=7}} |
− | {{#set: reconstruction category=annotation}} | + | {{#set: nb pathway associated=1}} |
− | {{#set: reconstruction tool=pathwaytools}} | + | {{#set: reconstruction category=annotation|orthology}} |
+ | {{#set: reconstruction tool=pathwaytools|pantograph}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=saccharina_japonica_genome}} | + | {{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 11:25, 15 January 2021
Contents
Reaction METHIONINE--TRNA-LIGASE-RXN
- direction:
- left-to-right
- common-name:
- methionine-trna ligase
- ec-number:
Reaction formula
- 1 ATP[c] + 1 Elongation-tRNAMet[c] + 1 MET[c] => 1 AMP[c] + 1 Charged-MET-tRNAs[c] + 1 PPI[c]
Gene(s) associated with this reaction
- Gene: SJ10034
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ03581
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ14459
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ21346
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ04411
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ10455
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ15542
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
Pathway(s)
- TRNA-CHARGING-PWY, tRNA charging:
- 21 reactions found over 21 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
External links