Difference between revisions of "RXN-5822"

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(Created page with "Category:reaction == Reaction 1.3.7.2-RXN == * direction: ** left-to-right * common-name: ** 15,16-dihydrobiliverdin:ferredoxin oxidoreductase * ec-number: ** [http://enzy...")
(Created page with "Category:reaction == Reaction RXNN-404 == * direction: ** left-to-right * common-name: ** amidase * ec-number: ** [http://enzyme.expasy.org/EC/3.5.1.4 ec-3.5.1.4] == React...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 1.3.7.2-RXN ==
+
== Reaction RXNN-404 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** 15,16-dihydrobiliverdin:ferredoxin oxidoreductase
+
** amidase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.3.7.2 ec-1.3.7.2]
+
** [http://enzyme.expasy.org/EC/3.5.1.4 ec-3.5.1.4]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[BILIVERDINE]][c] '''+''' 2 [[PROTON]][c] '''+''' 2 [[Reduced-ferredoxins]][c] '''=>''' 1 [[1516-DIHYDROBILIVERDIN]][c] '''+''' 2 [[Oxidized-ferredoxins]][c]
+
* 1 [[CPD-237]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[INDOLE_ACETATE_AUXIN]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ03344]]
+
* Gene: [[SJ22527]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ04340]]
+
* Gene: [[SJ01848]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ11012]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ16279]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5915]], phycoerythrobilin biosynthesis I:
+
* [[PWY-5025]], indole-3-acetate biosynthesis IV (bacteria):
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
** '''1''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-7579]], phycourobilin biosynthesis:
+
* [[PWY-3161]], indole-3-acetate biosynthesis III (bacteria):
−
** '''3''' reactions found over '''5''' reactions in the full pathway
+
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-581]], indole-3-acetate biosynthesis II:
 +
** '''5''' reactions found over '''12''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10170 10170]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=34372 34372]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R05818 R05818]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03096 R03096]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=15,16-dihydrobiliverdin:ferredoxin oxidoreductase}}
+
{{#set: common-name=amidase}}
−
{{#set: ec-number=ec-1.3.7.2}}
+
{{#set: ec-number=ec-3.5.1.4}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb gene associated=4}}
−
{{#set: nb pathway associated=2}}
+
{{#set: nb pathway associated=3}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:02, 5 January 2021

Reaction RXNN-404

  • direction:
    • left-to-right
  • common-name:
    • amidase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5025, indole-3-acetate biosynthesis IV (bacteria):
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-3161, indole-3-acetate biosynthesis III (bacteria):
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-581, indole-3-acetate biosynthesis II:
    • 5 reactions found over 12 reactions in the full pathway

Reconstruction information

External links





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