Difference between revisions of "RXN-6002"

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(Created page with "Category:reaction == Reaction RXN0-722 == * direction: ** left-to-right * common-name: ** 2'-deoxyuridine 5'-diphosphate:oxidized nrdh glutaredoxin-like protein oxidoreduc...")
(Created page with "Category:reaction == Reaction PYRROLINECARBDEHYDROG-RXN == * direction: ** left-to-right * common-name: ** 1-pyrroline-5-carboxylate dehydrogenase == Reaction formula == *...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN0-722 ==
+
== Reaction PYRROLINECARBDEHYDROG-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** 2'-deoxyuridine 5'-diphosphate:oxidized nrdh glutaredoxin-like protein oxidoreductase
+
** 1-pyrroline-5-carboxylate dehydrogenase
−
** ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor
 
−
* ec-number:
 
−
** [http://enzyme.expasy.org/EC/1.17.4.1 ec-1.17.4.1]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[Reduced-NrdH-Proteins]][c] '''+''' 1 [[UDP]][c] '''=>''' 1 [[DUDP]][c] '''+''' 1 [[Oxidized-NrdH-Proteins]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[L-DELTA1-PYRROLINE_5-CARBOXYLATE]][c] '''+''' 1 [[NAD]][c] '''+''' 2 [[WATER]][c] '''=>''' 1 [[GLT]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ10107]]
−
* Gene: [[SJ21120]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ03698]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ21121]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ17066]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ18284]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ14458]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ20794]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ03697]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ16809]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli):
 
−
** '''14''' reactions found over '''13''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR102301
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16418 16418]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00707 R00707]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q9ZN12 Q9ZN12]
 +
** [http://www.uniprot.org/uniprot/Q9PMG0 Q9PMG0]
 +
** [http://www.uniprot.org/uniprot/P09546 P09546]
 +
** [http://www.uniprot.org/uniprot/Q9JSY1 Q9JSY1]
 +
** [http://www.uniprot.org/uniprot/Q9K0Z9 Q9K0Z9]
 +
** [http://www.uniprot.org/uniprot/O24897 O24897]
 +
** [http://www.uniprot.org/uniprot/Q59426 Q59426]
 +
** [http://www.uniprot.org/uniprot/P07275 P07275]
 +
** [http://www.uniprot.org/uniprot/P10503 P10503]
 +
** [http://www.uniprot.org/uniprot/P74275 P74275]
 +
** [http://www.uniprot.org/uniprot/O74766 O74766]
 +
** [http://www.uniprot.org/uniprot/P95629 P95629]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor|2'-deoxyuridine 5'-diphosphate:oxidized nrdh glutaredoxin-like protein oxidoreductase}}
+
{{#set: common-name=1-pyrroline-5-carboxylate dehydrogenase}}
−
{{#set: ec-number=ec-1.17.4.1}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb gene associated=9}}
+
{{#set: nb pathway associated=0}}
−
{{#set: nb pathway associated=1}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome}}

Revision as of 08:33, 15 March 2021

Reaction PYRROLINECARBDEHYDROG-RXN

  • direction:
    • left-to-right
  • common-name:
    • 1-pyrroline-5-carboxylate dehydrogenase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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