Difference between revisions of "RXN-602"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PPGPPSYN-RXN PPGPPSYN-RXN] == * direction: ** left-to-right * common-name: ** guanosine-3',5'-bis(d...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=HACD5m HACD5m] == * direction: ** reversible * common-name: ** 3-hydroxyacyl-coa dehydrogenase (c12...")
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PPGPPSYN-RXN PPGPPSYN-RXN] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=HACD5m HACD5m] ==
 
* direction:
 
* direction:
** left-to-right
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** reversible
 
* common-name:
 
* common-name:
** guanosine-3',5'-bis(diphosphate) 3'-diphosphatase
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** 3-hydroxyacyl-coa dehydrogenase (c12:0)
* ec-number:
 
** [http://enzyme.expasy.org/EC/3.1.7.2 ec-3.1.7.2]
 
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[GUANOSINE-5DP-3DP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[GDP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[PROTON]][c]
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* 1.0 [[CPD0-2105]][m] '''+''' 1.0 [[NADH]][m] '''+''' 1.0 [[PROTON]][m] '''<=>''' 1.0 [[CPD0-2107]][m] '''+''' 1.0 [[NAD]][m]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[SJ10100]]
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* Gene: [[SJ03584]]
** Category: [[annotation]]
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** Category: [[orthology]]
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
* Gene: [[SJ14690]]
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* Gene: [[SJ21390]]
** Category: [[annotation]]
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** Category: [[orthology]]
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
* Gene: [[SJ07200]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
* Gene: [[SJ13961]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
* [[PPGPPMET-PWY]], ppGpp biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PPGPPMET-PWY PPGPPMET-PWY]
 
** '''5''' reactions found over '''6''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
* RHEA:
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{{#set: direction=reversible}}
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14254 14254]
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{{#set: common-name=3-hydroxyacyl-coa dehydrogenase (c12:0)}}
* LIGAND-RXN:
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{{#set: nb gene associated=2}}
** [http://www.genome.jp/dbget-bin/www_bget?R00336 R00336]
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{{#set: nb pathway associated=0}}
* UNIPROT:
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{{#set: reconstruction category=orthology}}
** [http://www.uniprot.org/uniprot/Q9PN26 Q9PN26]
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{{#set: reconstruction tool=pantograph}}
** [http://www.uniprot.org/uniprot/Q9JT97 Q9JT97]
 
** [http://www.uniprot.org/uniprot/P43811 P43811]
 
** [http://www.uniprot.org/uniprot/P0AG24 P0AG24]
 
{{#set: direction=left-to-right}}
 
{{#set: common-name=guanosine-3',5'-bis(diphosphate) 3'-diphosphatase}}
 
{{#set: ec-number=ec-3.1.7.2}}
 
{{#set: nb gene associated=4}}
 
{{#set: nb pathway associated=1}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
{{#set: reconstruction source=saccharina_japonica_genome}}
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{{#set: reconstruction source=output_pantograph_nannochloropsis_salina}}

Revision as of 09:31, 27 August 2019

Reaction HACD5m

  • direction:
    • reversible
  • common-name:
    • 3-hydroxyacyl-coa dehydrogenase (c12:0)

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links