Difference between revisions of "RXN-6550"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PEPCARBOX-RXN PEPCARBOX-RXN] == * direction: ** left-to-right * common-name: ** phosphoenolpyruvate...")
 
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=FPGFTh FPGFTh] == * direction: ** reversible * common-name: ** 10-formyltetrahydrofolate:5'-phospho...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PEPCARBOX-RXN PEPCARBOX-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=FPGFTh FPGFTh] ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** phosphoenolpyruvate carboxylase
+
** 10-formyltetrahydrofolate:5'-phosphoribosylglycinamide formyltransferase, chloroplast
−
* ec-number:
 
−
** [http://enzyme.expasy.org/EC/4.1.1.31 ec-4.1.1.31]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[HCO3]][c] '''+''' 1 [[PHOSPHO-ENOL-PYRUVATE]][c] '''=>''' 1 [[OXALACETIC_ACID]][c] '''+''' 1 [[Pi]][c]
+
* 1.0 [[10-FORMYL-THF]][h] '''+''' 1.0 [[5-PHOSPHO-RIBOSYL-GLYCINEAMIDE]][h] '''<=>''' 1.0 [[5-P-RIBOSYL-N-FORMYLGLYCINEAMIDE]][h] '''+''' 1.0 [[PROTON]][h] '''+''' 1.0 [[THF]][h]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ04004]]
+
* Gene: [[SJ06408]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
−
* [[PWY-7124]], ethylene biosynthesis V (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7124 PWY-7124]
 
−
** '''8''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-6549]], L-glutamine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6549 PWY-6549]
 
−
** '''8''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-1622]], formaldehyde assimilation I (serine pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1622 PWY-1622]
 
−
** '''6''' reactions found over '''13''' reactions in the full pathway
 
−
* [[PWY-7117]], C4 photosynthetic carbon assimilation cycle, PEPCK type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7117 PWY-7117]
 
−
** '''10''' reactions found over '''12''' reactions in the full pathway
 
−
* [[PWY-7115]], C4 photosynthetic carbon assimilation cycle, NAD-ME type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7115 PWY-7115]
 
−
** '''9''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-241]], C4 photosynthetic carbon assimilation cycle, NADP-ME type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-241 PWY-241]
 
−
** '''5''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-5913]], partial TCA cycle (obligate autotrophs): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913]
 
−
** '''10''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-6142]], gluconeogenesis II (Methanobacterium thermoautotrophicum): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6142 PWY-6142]
 
−
** '''10''' reactions found over '''13''' reactions in the full pathway
 
−
* [[P23-PWY]], reductive TCA cycle I: [http://metacyc.org/META/NEW-IMAGE?object=P23-PWY P23-PWY]
 
−
** '''9''' reactions found over '''12''' reactions in the full pathway
 
−
* [[PWYQT-4429]], CO2 fixation into oxaloacetate (anaplerotic): [http://metacyc.org/META/NEW-IMAGE?object=PWYQT-4429 PWYQT-4429]
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-6146]], Methanobacterium thermoautotrophicum biosynthetic metabolism: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6146 PWY-6146]
 
−
** '''9''' reactions found over '''2''' reactions in the full pathway
 
−
* [[FERMENTATION-PWY]], mixed acid fermentation: [http://metacyc.org/META/NEW-IMAGE?object=FERMENTATION-PWY FERMENTATION-PWY]
 
−
** '''11''' reactions found over '''16''' reactions in the full pathway
 
−
</div>
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
{{#set: direction=reversible}}
−
* LIGAND-RXN:
+
{{#set: common-name=10-formyltetrahydrofolate:5'-phosphoribosylglycinamide formyltransferase, chloroplast}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R00345 R00345]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P28594 P28594]
 
−
** [http://www.uniprot.org/uniprot/P43920 P43920]
 
−
** [http://www.uniprot.org/uniprot/P29195 P29195]
 
−
** [http://www.uniprot.org/uniprot/P51059 P51059]
 
−
** [http://www.uniprot.org/uniprot/P00864 P00864]
 
−
** [http://www.uniprot.org/uniprot/P12880 P12880]
 
−
** [http://www.uniprot.org/uniprot/P10490 P10490]
 
−
** [http://www.uniprot.org/uniprot/P16097 P16097]
 
−
** [http://www.uniprot.org/uniprot/P27154 P27154]
 
−
** [http://www.uniprot.org/uniprot/P06516 P06516]
 
−
** [http://www.uniprot.org/uniprot/Q43267 Q43267]
 
−
** [http://www.uniprot.org/uniprot/Q41197 Q41197]
 
−
** [http://www.uniprot.org/uniprot/P29194 P29194]
 
−
** [http://www.uniprot.org/uniprot/P30694 P30694]
 
−
** [http://www.uniprot.org/uniprot/P15804 P15804]
 
−
** [http://www.uniprot.org/uniprot/Q43268 Q43268]
 
−
** [http://www.uniprot.org/uniprot/Q01647 Q01647]
 
−
** [http://www.uniprot.org/uniprot/Q01648 Q01648]
 
−
** [http://www.uniprot.org/uniprot/Q02735 Q02735]
 
−
** [http://www.uniprot.org/uniprot/Q02909 Q02909]
 
−
** [http://www.uniprot.org/uniprot/Q42730 Q42730]
 
−
** [http://www.uniprot.org/uniprot/Q41198 Q41198]
 
−
** [http://www.uniprot.org/uniprot/P51063 P51063]
 
−
** [http://www.uniprot.org/uniprot/Q40103 Q40103]
 
−
** [http://www.uniprot.org/uniprot/Q40104 Q40104]
 
−
** [http://www.uniprot.org/uniprot/Q40105 Q40105]
 
−
** [http://www.uniprot.org/uniprot/Q40102 Q40102]
 
−
** [http://www.uniprot.org/uniprot/Q41836 Q41836]
 
−
** [http://www.uniprot.org/uniprot/O22118 O22118]
 
−
** [http://www.uniprot.org/uniprot/O22119 O22119]
 
−
** [http://www.uniprot.org/uniprot/O48623 O48623]
 
−
** [http://www.uniprot.org/uniprot/Q42634 Q42634]
 
−
** [http://www.uniprot.org/uniprot/O23946 O23946]
 
−
** [http://www.uniprot.org/uniprot/O23947 O23947]
 
−
** [http://www.uniprot.org/uniprot/Q84VW9 Q84VW9]
 
−
</div>
 
−
{{#set: direction=left-to-right}}
 
−
{{#set: common-name=phosphoenolpyruvate carboxylase}}
 
−
{{#set: ec-number=ec-4.1.1.31}}
 
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=12}}
+
{{#set: nb pathway associated=0}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina}}

Revision as of 14:28, 26 August 2019

Reaction FPGFTh

  • direction:
    • reversible
  • common-name:
    • 10-formyltetrahydrofolate:5'-phosphoribosylglycinamide formyltransferase, chloroplast

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-6550&oldid=24497"