Difference between revisions of "RXN-6641"
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(Created page with "Category:reaction == Reaction 3.1.1.73-RXN == * direction: ** left-to-right * common-name: ** feruloyl esterase ** 4-hydroxy-3-methoxycinnamoyl-sugar hydrolase * ec-number...") |
(Created page with "Category:reaction == Reaction AGMATINE-DEIMINASE-RXN == * direction: ** left-to-right * common-name: ** agmatine deaminase * ec-number: ** [http://enzyme.expasy.org/EC/3.5...") |
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[[Category:reaction]] | [[Category:reaction]] | ||
| − | == Reaction | + | == Reaction AGMATINE-DEIMINASE-RXN == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
* common-name: | * common-name: | ||
| − | ** | + | ** agmatine deaminase |
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* ec-number: | * ec-number: | ||
| − | ** [http://enzyme.expasy.org/EC/3. | + | ** [http://enzyme.expasy.org/EC/3.5.3.12 ec-3.5.3.12] |
== Reaction formula == | == Reaction formula == | ||
| − | * 1 [[ | + | * 1 [[AGMATHINE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[CPD-597]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
| − | + | * Gene: [[SJ16434]] | |
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| − | * Gene: [[ | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
| − | + | ** Category: [[orthology]] | |
| − | ** Category: [[ | + | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a |
| − | *** Source: [[ | + | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a |
| − | + | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | |
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| − | *** Source: [[ | ||
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| − | *** Source: [[ | ||
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== Pathway(s) == | == Pathway(s) == | ||
| − | * [[PWY | + | * [[ARGDEG-III-PWY]], L-arginine degradation IV (arginine decarboxylase/agmatine deiminase pathway): |
| − | ** ''' | + | ** '''3''' reactions found over '''3''' reactions in the full pathway |
| + | * [[PWY-43]], putrescine biosynthesis II: | ||
| + | ** '''3''' reactions found over '''3''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
| + | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
| + | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
== External links == | == External links == | ||
| + | * RHEA: | ||
| + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18038 18038] | ||
* LIGAND-RXN: | * LIGAND-RXN: | ||
| − | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R01416 R01416] |
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
| − | {{#set: common-name= | + | {{#set: common-name=agmatine deaminase}} |
| − | {{#set: ec-number=ec-3. | + | {{#set: ec-number=ec-3.5.3.12}} |
| − | {{#set: nb gene associated= | + | {{#set: nb gene associated=1}} |
| − | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=2}} |
| − | {{#set: reconstruction category=annotation}} | + | {{#set: reconstruction category=annotation|orthology}} |
| − | {{#set: reconstruction tool=pathwaytools}} | + | {{#set: reconstruction tool=pathwaytools|pantograph}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
| − | {{#set: reconstruction source=saccharina_japonica_genome}} | + | {{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 15:35, 5 January 2021
Contents
Reaction AGMATINE-DEIMINASE-RXN
- direction:
- left-to-right
- common-name:
- agmatine deaminase
- ec-number:
Reaction formula
Gene(s) associated with this reaction
- Gene: SJ16434
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- ARGDEG-III-PWY, L-arginine degradation IV (arginine decarboxylase/agmatine deiminase pathway):
- 3 reactions found over 3 reactions in the full pathway
- PWY-43, putrescine biosynthesis II:
- 3 reactions found over 3 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
External links
