Difference between revisions of "RXN-6642"

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(Created page with "Category:reaction == Reaction PHOSPHAGLYPSYN-RXN == * direction: ** left-to-right * common-name: ** cdp-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase * ec-...")
(Created page with "Category:reaction == Reaction RXN-11919 == * direction: ** left-to-right * common-name: ** (2e)-5-methylhexa-2,4-dienoyl-coa hydratase * ec-number: ** [http://enzyme.expas...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction PHOSPHAGLYPSYN-RXN ==
+
== Reaction RXN-11919 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** cdp-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase
+
** (2e)-5-methylhexa-2,4-dienoyl-coa hydratase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.7.8.5 ec-2.7.8.5]
+
** [http://enzyme.expasy.org/EC/4.2.1 ec-4.2.1]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CDPDIACYLGLYCEROL]][c] '''+''' 1 [[GLYCEROL-3P]][c] '''=>''' 1 [[CMP]][c] '''+''' 1 [[L-1-PHOSPHATIDYL-GLYCEROL-P]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[CPD-12904]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD-12905]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ08733]]
+
* Gene: [[SJ03913]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5269]], cardiolipin biosynthesis II:
+
* [[PWY-6672]], cis-genanyl-CoA degradation:
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
** '''4''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY0-1545]], cardiolipin biosynthesis III:
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-5668]], cardiolipin biosynthesis I:
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY4FS-8]], phosphatidylglycerol biosynthesis II (non-plastidic):
 
−
** '''3''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY4FS-7]], phosphatidylglycerol biosynthesis I (plastidic):
 
−
** '''3''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-7817]], type I lipoteichoic acid biosynthesis (S. aureus):
 
−
** '''6''' reactions found over '''16''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12593 12593]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01801 R01801]
+
** [http://www.genome.jp/dbget-bin/www_bget?R08093 R08093]
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/Q9JTH1 Q9JTH1]
 
−
** [http://www.uniprot.org/uniprot/P46322 P46322]
 
−
** [http://www.uniprot.org/uniprot/P44528 P44528]
 
−
** [http://www.uniprot.org/uniprot/P47360 P47360]
 
−
** [http://www.uniprot.org/uniprot/Q9PNM7 Q9PNM7]
 
−
** [http://www.uniprot.org/uniprot/O25660 O25660]
 
−
** [http://www.uniprot.org/uniprot/O51663 O51663]
 
−
** [http://www.uniprot.org/uniprot/O67908 O67908]
 
−
** [http://www.uniprot.org/uniprot/Q49839 Q49839]
 
−
** [http://www.uniprot.org/uniprot/P75520 P75520]
 
−
** [http://www.uniprot.org/uniprot/P74372 P74372]
 
−
** [http://www.uniprot.org/uniprot/Q48959 Q48959]
 
−
** [http://www.uniprot.org/uniprot/P0ABF8 P0ABF8]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=cdp-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase}}
+
{{#set: common-name=(2e)-5-methylhexa-2,4-dienoyl-coa hydratase}}
−
{{#set: ec-number=ec-2.7.8.5}}
+
{{#set: ec-number=ec-4.2.1}}
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=6}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana}}

Revision as of 11:24, 15 January 2021

Reaction RXN-11919

  • direction:
    • left-to-right
  • common-name:
    • (2e)-5-methylhexa-2,4-dienoyl-coa hydratase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6672, cis-genanyl-CoA degradation:
    • 4 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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