Difference between revisions of "RXN-6642"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction DNA-LIGASE-ATP-RXN == * direction: ** left-to-right * common-name: ** dna ligase (atp) * ec-number: ** [http://enzyme.expasy.org/EC/6.5.1.7 e...")
(Created page with "Category:reaction == Reaction RXN-6642 == * direction: ** left-to-right * common-name: ** [cys-gly]-s-conjugate dipeptidase * ec-number: ** [http://enzyme.expasy.org/EC/3....")
 
(6 intermediate revisions by 2 users not shown)
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction DNA-LIGASE-ATP-RXN ==
+
== Reaction RXN-6642 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** dna ligase (atp)
+
** [cys-gly]-s-conjugate dipeptidase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.5.1.7 ec-6.5.1.7]
+
** [http://enzyme.expasy.org/EC/3.4.11.2 ec-3.4.11.2]
−
** [http://enzyme.expasy.org/EC/6.5.1.1 ec-6.5.1.1]
 
−
** [http://enzyme.expasy.org/EC/6.5.1.6 ec-6.5.1.6]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[3-Hydroxy-Terminated-DNAs]][c] '''+''' 1 [[5-Phospho-terminated-DNAs]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[DNA-N]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[CPD-6262]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[GLY]][c] '''+''' 1 [[S-Substituted-L-Cysteines]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ13521]]
+
* Gene: [[SJ10244]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ15543]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ16080]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
Line 26: Line 16:
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-6842]], glutathione-mediated detoxification II:
 +
** '''5''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-4061]], glutathione-mediated detoxification I:
 +
** '''4''' reactions found over '''8''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR121867
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00381 R00381]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P12000 P12000]
 
−
** [http://www.uniprot.org/uniprot/P18858 P18858]
 
−
** [http://www.uniprot.org/uniprot/P35970 P35970]
 
−
** [http://www.uniprot.org/uniprot/Q9QNG8 Q9QNG8]
 
−
** [http://www.uniprot.org/uniprot/Q9PM08 Q9PM08]
 
−
** [http://www.uniprot.org/uniprot/Q57635 Q57635]
 
−
** [http://www.uniprot.org/uniprot/P49917 P49917]
 
−
** [http://www.uniprot.org/uniprot/P49916 P49916]
 
−
** [http://www.uniprot.org/uniprot/P37913 P37913]
 
−
** [http://www.uniprot.org/uniprot/P51892 P51892]
 
−
** [http://www.uniprot.org/uniprot/P16272 P16272]
 
−
** [http://www.uniprot.org/uniprot/P33798 P33798]
 
−
** [http://www.uniprot.org/uniprot/P00970 P00970]
 
−
** [http://www.uniprot.org/uniprot/P00969 P00969]
 
−
** [http://www.uniprot.org/uniprot/P04819 P04819]
 
−
** [http://www.uniprot.org/uniprot/P19088 P19088]
 
−
** [http://www.uniprot.org/uniprot/P07717 P07717]
 
−
** [http://www.uniprot.org/uniprot/P26813 P26813]
 
−
** [http://www.uniprot.org/uniprot/Q02093 Q02093]
 
−
** [http://www.uniprot.org/uniprot/Q23694 Q23694]
 
−
** [http://www.uniprot.org/uniprot/Q67480 Q67480]
 
−
** [http://www.uniprot.org/uniprot/Q42572 Q42572]
 
−
** [http://www.uniprot.org/uniprot/P20492 P20492]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=dna ligase (atp)}}
+
{{#set: common-name=[cys-gly]-s-conjugate dipeptidase}}
−
{{#set: ec-number=ec-6.5.1.1|ec-6.5.1.6|ec-6.5.1.7}}
+
{{#set: ec-number=ec-3.4.11.2}}
−
{{#set: nb gene associated=3}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=2}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:22, 18 March 2021

Reaction RXN-6642

  • direction:
    • left-to-right
  • common-name:
    • [cys-gly]-s-conjugate dipeptidase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6842, glutathione-mediated detoxification II:
    • 5 reactions found over 9 reactions in the full pathway
  • PWY-4061, glutathione-mediated detoxification I:
    • 4 reactions found over 8 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR121867

Property "Common-name" (as page type) with input value "cys-gly]-s-conjugate dipeptidase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-6642&oldid=141780"