Difference between revisions of "RXN-6642"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTKIN-RXN GLUTKIN-RXN] == * direction: ** left-to-right * common-name: ** glutamate 5-kinase * ec...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11601 RXN-11601] == * direction: ** left-to-right * common-name: ** 23s rrna m5u1939 methyltran...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTKIN-RXN GLUTKIN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11601 RXN-11601] ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** glutamate 5-kinase
+
** 23s rrna m5u1939 methyltransferase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.7.2.11 ec-2.7.2.11]
+
** [http://enzyme.expasy.org/EC/2.1.1.190 ec-2.1.1.190]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[GLT]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[L-GLUTAMATE-5-P]][c]
+
* 1 [[23S-rRNA-uracil-1939]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[23S-rRNA-5-methyluracil1939]][c] '''+''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ02923]]
+
* Gene: [[SJ14225]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ06433]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ22406]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ09366]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6922]], L-Nδ-acetylornithine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6922 PWY-6922]
 
−
** '''5''' reactions found over '''7''' reactions in the full pathway
 
−
* [[ARGININE-SYN4-PWY]], L-ornithine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=ARGININE-SYN4-PWY ARGININE-SYN4-PWY]
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-3341]], L-proline biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3341 PWY-3341]
 
−
** '''4''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PROSYN-PWY]], L-proline biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PROSYN-PWY PROSYN-PWY]
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
* [[CITRULBIO-PWY]], L-citrulline biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=CITRULBIO-PWY CITRULBIO-PWY]
 
−
** '''7''' reactions found over '''8''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14878 14878]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=42909 42909]
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00239 R00239]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/Q9PJ29 Q9PJ29]
 
−
** [http://www.uniprot.org/uniprot/Q9CF72 Q9CF72]
 
−
** [http://www.uniprot.org/uniprot/Q9JUK7 Q9JUK7]
 
−
** [http://www.uniprot.org/uniprot/P43763 P43763]
 
−
** [http://www.uniprot.org/uniprot/P0A7B5 P0A7B5]
 
−
** [http://www.uniprot.org/uniprot/P17856 P17856]
 
−
** [http://www.uniprot.org/uniprot/P32264 P32264]
 
−
** [http://www.uniprot.org/uniprot/P73071 P73071]
 
−
** [http://www.uniprot.org/uniprot/O04226 O04226]
 
−
** [http://www.uniprot.org/uniprot/O13810 O13810]
 
−
** [http://www.uniprot.org/uniprot/P46546 P46546]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=glutamate 5-kinase}}
+
{{#set: common-name=23s rrna m5u1939 methyltransferase}}
−
{{#set: ec-number=ec-2.7.2.11}}
+
{{#set: ec-number=ec-2.1.1.190}}
−
{{#set: nb gene associated=4}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=5}}
+
{{#set: nb pathway associated=0}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 09:32, 27 August 2019

Reaction RXN-11601

  • direction:
    • left-to-right
  • common-name:
    • 23s rrna m5u1939 methyltransferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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