Difference between revisions of "RXN-6642"

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(Created page with "Category:reaction == Reaction DNA-LIGASE-ATP-RXN == * direction: ** left-to-right * common-name: ** dna ligase (atp) * ec-number: ** [http://enzyme.expasy.org/EC/6.5.1.7 e...")
(Created page with "Category:reaction == Reaction ALKANE-1-MONOOXYGENASE-RXN == * direction: ** left-to-right * common-name: ** alkane hydroxylase * ec-number: ** [http://enzyme.expasy.org/EC...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction DNA-LIGASE-ATP-RXN ==
+
== Reaction ALKANE-1-MONOOXYGENASE-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** dna ligase (atp)
+
** alkane hydroxylase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.5.1.7 ec-6.5.1.7]
+
** [http://enzyme.expasy.org/EC/1.14.15.3 ec-1.14.15.3]
−
** [http://enzyme.expasy.org/EC/6.5.1.1 ec-6.5.1.1]
 
−
** [http://enzyme.expasy.org/EC/6.5.1.6 ec-6.5.1.6]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[3-Hydroxy-Terminated-DNAs]][c] '''+''' 1 [[5-Phospho-terminated-DNAs]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[DNA-N]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[CPD-148]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 2 [[PROTON]][c] '''+''' 2 [[Reduced-Rubredoxins]][c] '''=>''' 1 [[OCTANOL]][c] '''+''' 2 [[Oxidized-Rubredoxins]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ13521]]
+
* Gene: [[SJ07069]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ15543]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ16080]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[P221-PWY]], octane oxidation:
 +
** '''3''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19342 19342]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00381 R00381]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02879 R02879]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P12000 P12000]
+
** [http://www.uniprot.org/uniprot/P12691 P12691]
−
** [http://www.uniprot.org/uniprot/P18858 P18858]
+
** [http://www.uniprot.org/uniprot/P14580 P14580]
−
** [http://www.uniprot.org/uniprot/P35970 P35970]
+
** [http://www.uniprot.org/uniprot/P14579 P14579]
−
** [http://www.uniprot.org/uniprot/Q9QNG8 Q9QNG8]
+
** [http://www.uniprot.org/uniprot/Q02928 Q02928]
−
** [http://www.uniprot.org/uniprot/Q9PM08 Q9PM08]
+
** [http://www.uniprot.org/uniprot/P08516 P08516]
−
** [http://www.uniprot.org/uniprot/Q57635 Q57635]
 
−
** [http://www.uniprot.org/uniprot/P49917 P49917]
 
−
** [http://www.uniprot.org/uniprot/P49916 P49916]
 
−
** [http://www.uniprot.org/uniprot/P37913 P37913]
 
−
** [http://www.uniprot.org/uniprot/P51892 P51892]
 
−
** [http://www.uniprot.org/uniprot/P16272 P16272]
 
−
** [http://www.uniprot.org/uniprot/P33798 P33798]
 
−
** [http://www.uniprot.org/uniprot/P00970 P00970]
 
−
** [http://www.uniprot.org/uniprot/P00969 P00969]
 
−
** [http://www.uniprot.org/uniprot/P04819 P04819]
 
−
** [http://www.uniprot.org/uniprot/P19088 P19088]
 
−
** [http://www.uniprot.org/uniprot/P07717 P07717]
 
−
** [http://www.uniprot.org/uniprot/P26813 P26813]
 
−
** [http://www.uniprot.org/uniprot/Q02093 Q02093]
 
−
** [http://www.uniprot.org/uniprot/Q23694 Q23694]
 
−
** [http://www.uniprot.org/uniprot/Q67480 Q67480]
 
−
** [http://www.uniprot.org/uniprot/Q42572 Q42572]
 
−
** [http://www.uniprot.org/uniprot/P20492 P20492]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=dna ligase (atp)}}
+
{{#set: common-name=alkane hydroxylase}}
−
{{#set: ec-number=ec-6.5.1.1|ec-6.5.1.6|ec-6.5.1.7}}
+
{{#set: ec-number=ec-1.14.15.3}}
−
{{#set: nb gene associated=3}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 15:04, 5 January 2021

Reaction ALKANE-1-MONOOXYGENASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • alkane hydroxylase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • P221-PWY, octane oxidation:
    • 3 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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