Difference between revisions of "RXN-711"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=THIOSULFATE-SULFURTRANSFERASE-RXN THIOSULFATE-SULFURTRANSFERASE-RXN] == * direction: ** left-to-rig...")
 
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GCVT-RXN GCVT-RXN] == * direction: ** reversible * common-name: ** aminomethyltransferase * ec-numb...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=THIOSULFATE-SULFURTRANSFERASE-RXN THIOSULFATE-SULFURTRANSFERASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GCVT-RXN GCVT-RXN] ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** thiosulfate sulfurtransferase
+
** aminomethyltransferase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.8.1.1 ec-2.8.1.1]
+
** [http://enzyme.expasy.org/EC/2.1.2.10 ec-2.1.2.10]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[HCN]][c] '''+''' 1 [[S2O3]][c] '''=>''' 1 [[HSCN]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[SO3]][c]
+
* 1 [[AMINOMETHYLDIHYDROLIPOYL-GCVH]][c] '''+''' 1 [[THF-GLU-N]][c] '''<=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[DIHYDROLIPOYL-GCVH]][c] '''+''' 1 [[METHYLENE-THF-GLU-N]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ06337]]
+
* Gene: [[SJ16345]]
−
** Category: [[annotation]]
+
** Category: [[orthology]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ16682]]
+
* Gene: [[SJ19914]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ12357]]
+
* Gene: [[SJ08557]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ00307]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
Line 27: Line 22:
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5350]], thiosulfate disproportionation IV (rhodanese): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5350 PWY-5350]
+
* [[GLYCLEAV-PWY]], glycine cleavage: [http://metacyc.org/META/NEW-IMAGE?object=GLYCLEAV-PWY GLYCLEAV-PWY]
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R04125 R04125]
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16882 16882]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16945 16945]
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R01931 R01931]
 
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P25324 P25324]
+
** [http://www.uniprot.org/uniprot/P25285 P25285]
−
** [http://www.uniprot.org/uniprot/P52196 P52196]
+
** [http://www.uniprot.org/uniprot/P28337 P28337]
−
** [http://www.uniprot.org/uniprot/Q16762 Q16762]
+
** [http://www.uniprot.org/uniprot/P27248 P27248]
−
** [http://www.uniprot.org/uniprot/P00586 P00586]
+
** [http://www.uniprot.org/uniprot/Q9UZP8 Q9UZP8]
−
** [http://www.uniprot.org/uniprot/P25325 P25325]
+
** [http://www.uniprot.org/uniprot/Q9JVP2 Q9JVP2]
−
** [http://www.uniprot.org/uniprot/P24329 P24329]
+
** [http://www.uniprot.org/uniprot/P48728 P48728]
−
** [http://www.uniprot.org/uniprot/P52197 P52197]
+
** [http://www.uniprot.org/uniprot/P49364 P49364]
−
** [http://www.uniprot.org/uniprot/O64530 O64530]
+
** [http://www.uniprot.org/uniprot/P49095 P49095]
−
** [http://www.uniprot.org/uniprot/O50573 O50573]
+
** [http://www.uniprot.org/uniprot/P49363 P49363]
−
** [http://www.uniprot.org/uniprot/Q9M4F7 Q9M4F7]
+
** [http://www.uniprot.org/uniprot/P54260 P54260]
−
** [http://www.uniprot.org/uniprot/Q9SCY8 Q9SCY8]
+
** [http://www.uniprot.org/uniprot/P49361 P49361]
−
** [http://www.uniprot.org/uniprot/Q9S7Y9 Q9S7Y9]
+
** [http://www.uniprot.org/uniprot/P49362 P49362]
−
{{#set: direction=left-to-right}}
+
** [http://www.uniprot.org/uniprot/O49954 O49954]
−
{{#set: common-name=thiosulfate sulfurtransferase}}
+
** [http://www.uniprot.org/uniprot/P93256 P93256]
−
{{#set: ec-number=ec-2.8.1.1}}
+
** [http://www.uniprot.org/uniprot/O32955 O32955]
−
{{#set: nb gene associated=4}}
+
</div>
 +
{{#set: direction=reversible}}
 +
{{#set: common-name=aminomethyltransferase}}
 +
{{#set: ec-number=ec-2.1.2.10}}
 +
{{#set: nb gene associated=3}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 14:28, 26 August 2019

Reaction GCVT-RXN

  • direction:
    • reversible
  • common-name:
    • aminomethyltransferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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