Difference between revisions of "RXN-715"
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(Created page with "Category:reaction == Reaction RXN-10705 == * direction: ** left-to-right * common-name: ** opc4-trans-2-enoyl-coa hydratase ** enoyl-coa hydratase * ec-number: ** [http://...") |
(Created page with "Category:reaction == Reaction 2.7.7.60-RXN == * direction: ** left-to-right * common-name: ** 4-diphosphocytidyl-2c-methyl-d-erythritol synthase * ec-number: ** [http://en...") |
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[[Category:reaction]] | [[Category:reaction]] | ||
| − | == Reaction RXN | + | == Reaction 2.7.7.60-RXN == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
* common-name: | * common-name: | ||
| − | ** | + | ** 4-diphosphocytidyl-2c-methyl-d-erythritol synthase |
| − | |||
* ec-number: | * ec-number: | ||
| − | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/2.7.7.60 ec-2.7.7.60] |
| + | * synonymous: | ||
| + | ** 4-diphosphocytidyl-2-methylerithritol synthase (sugar nucleotide phosphorylase family) | ||
== Reaction formula == | == Reaction formula == | ||
| − | * 1 [[ | + | * 1 [[2-C-METHYL-D-ERYTHRITOL-4-PHOSPHATE]][c] '''+''' 1 [[CTP]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[4-CYTIDINE-5-DIPHOSPHO-2-C]][c] '''+''' 1 [[PPI]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
| − | + | * Gene: [[SJ10622]] | |
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| − | * Gene: [[ | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
| + | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
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== Pathway(s) == | == Pathway(s) == | ||
| − | * [[PWY- | + | * [[PWY-7560]], methylerythritol phosphate pathway II: |
| − | ** ''' | + | ** '''9''' reactions found over '''9''' reactions in the full pathway |
| + | * [[NONMEVIPP-PWY]], methylerythritol phosphate pathway I: | ||
| + | ** '''9''' reactions found over '''9''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
| + | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| − | * category: [[orthology]]; source: [[ | + | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a |
== External links == | == External links == | ||
| + | * RHEA: | ||
| + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13429 13429] | ||
| + | * LIGAND-RXN: | ||
| + | ** [http://www.genome.jp/dbget-bin/www_bget?R05633 R05633] | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
| − | {{#set: common-name= | + | {{#set: common-name=4-diphosphocytidyl-2c-methyl-d-erythritol synthase}} |
| − | {{#set: ec-number=ec- | + | {{#set: ec-number=ec-2.7.7.60}} |
| − | {{#set: nb gene associated= | + | {{#set: synonymous=4-diphosphocytidyl-2-methylerithritol synthase (sugar nucleotide phosphorylase family)}} |
| − | {{#set: nb pathway associated= | + | {{#set: nb gene associated=1}} |
| + | {{#set: nb pathway associated=2}} | ||
{{#set: reconstruction category=annotation|orthology}} | {{#set: reconstruction category=annotation|orthology}} | ||
{{#set: reconstruction tool=pathwaytools|pantograph}} | {{#set: reconstruction tool=pathwaytools|pantograph}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
| − | {{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} | + | {{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 11:21, 15 January 2021
Contents
Reaction 2.7.7.60-RXN
- direction:
- left-to-right
- common-name:
- 4-diphosphocytidyl-2c-methyl-d-erythritol synthase
- ec-number:
- synonymous:
- 4-diphosphocytidyl-2-methylerithritol synthase (sugar nucleotide phosphorylase family)
Reaction formula
- 1 2-C-METHYL-D-ERYTHRITOL-4-PHOSPHATE[c] + 1 CTP[c] + 1 PROTON[c] => 1 4-CYTIDINE-5-DIPHOSPHO-2-C[c] + 1 PPI[c]
Gene(s) associated with this reaction
- Gene: SJ10622
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-7560, methylerythritol phosphate pathway II:
- 9 reactions found over 9 reactions in the full pathway
- NONMEVIPP-PWY, methylerythritol phosphate pathway I:
- 9 reactions found over 9 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
External links
