Difference between revisions of "RXN-7609"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14268 RXN-14268] == * direction: ** left-to-right * common-name: ** lauroyl-coa acetyl-coa acyl...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRYPTOPHAN--TRNA-LIGASE-RXN TRYPTOPHAN--TRNA-LIGASE-RXN] == * direction: ** left-to-right * common-...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14268 RXN-14268] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRYPTOPHAN--TRNA-LIGASE-RXN TRYPTOPHAN--TRNA-LIGASE-RXN] ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** lauroyl-coa acetyl-coa acyltransferase
+
** tryptophan-trna ligase
−
** acetyl-coa c-acyltransferase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.3.1.16 ec-2.3.1.16]
+
** [http://enzyme.expasy.org/EC/6.1.1.2 ec-6.1.1.2]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CO-A]][c] '''+''' 1 [[CPD-10284]][c] '''=>''' 1 [[ACETYL-COA]][c] '''+''' 1 [[LAUROYLCOA-CPD]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[TRP]][c] '''+''' 1 [[TRP-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-TRP-tRNAs]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ20749]]
−
* Gene: [[SJ09371]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ21092]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ21817]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ16470]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
* Gene: [[SJ02283]]
−
* Gene: [[SJ14898]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ21818]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7654]], (8E,10E)-dodeca-8,10-dienol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7654 PWY-7654]
+
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
−
** '''5''' reactions found over '''11''' reactions in the full pathway
+
** '''21''' reactions found over '''21''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=31093 31093]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24081 24081]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03858 R03858]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03664 R03664]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P23381 P23381]
 +
** [http://www.uniprot.org/uniprot/Q9ZD76 Q9ZD76]
 +
** [http://www.uniprot.org/uniprot/O84589 O84589]
 +
** [http://www.uniprot.org/uniprot/Q9PIB4 Q9PIB4]
 +
** [http://www.uniprot.org/uniprot/Q9CJD1 Q9CJD1]
 +
** [http://www.uniprot.org/uniprot/P43835 P43835]
 +
** [http://www.uniprot.org/uniprot/Q9Z7A4 Q9Z7A4]
 +
** [http://www.uniprot.org/uniprot/Q9WYW2 Q9WYW2]
 +
** [http://www.uniprot.org/uniprot/O26352 O26352]
 +
** [http://www.uniprot.org/uniprot/O51038 O51038]
 +
** [http://www.uniprot.org/uniprot/Q9ZJX4 Q9ZJX4]
 +
** [http://www.uniprot.org/uniprot/Q9JTQ0 Q9JTQ0]
 +
** [http://www.uniprot.org/uniprot/Q58810 Q58810]
 +
** [http://www.uniprot.org/uniprot/O83640 O83640]
 +
** [http://www.uniprot.org/uniprot/P67590 P67590]
 +
** [http://www.uniprot.org/uniprot/O67115 O67115]
 +
** [http://www.uniprot.org/uniprot/P47372 P47372]
 +
** [http://www.uniprot.org/uniprot/P32921 P32921]
 +
** [http://www.uniprot.org/uniprot/Q12109 Q12109]
 +
** [http://www.uniprot.org/uniprot/Q49901 Q49901]
 +
** [http://www.uniprot.org/uniprot/P75510 P75510]
 +
** [http://www.uniprot.org/uniprot/O42875 O42875]
 +
** [http://www.uniprot.org/uniprot/O96771 O96771]
 +
** [http://www.uniprot.org/uniprot/P17248 P17248]
 +
** [http://www.uniprot.org/uniprot/P21656 P21656]
 +
** [http://www.uniprot.org/uniprot/P04803 P04803]
 +
** [http://www.uniprot.org/uniprot/P00954 P00954]
 +
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=lauroyl-coa acetyl-coa acyltransferase|acetyl-coa c-acyltransferase}}
+
{{#set: common-name=tryptophan-trna ligase}}
−
{{#set: ec-number=ec-2.3.1.16}}
+
{{#set: ec-number=ec-6.1.1.2}}
−
{{#set: nb gene associated=5}}
+
{{#set: nb gene associated=3}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Revision as of 09:30, 27 August 2019

Reaction TRYPTOPHAN--TRNA-LIGASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • tryptophan-trna ligase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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