Difference between revisions of "RXN-7647"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction FADSYN-RXN == * direction: ** left-to-right * common-name: ** fmn adenylyltransferase * ec-number: ** [http://enzyme.expasy.org/EC/2.7.7.2 ec...")
(Created page with "Category:reaction == Reaction 2.8.1.6-RXN == * direction: ** left-to-right * common-name: ** biotin synthase * ec-number: ** [http://enzyme.expasy.org/EC/2.8.1.6 ec-2.8.1....")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction FADSYN-RXN ==
+
== Reaction 2.8.1.6-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** fmn adenylyltransferase
+
** biotin synthase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.7.7.2 ec-2.7.7.2]
+
** [http://enzyme.expasy.org/EC/2.8.1.6 ec-2.8.1.6]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[FMN]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[FAD]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[DETHIOBIOTIN]][c] '''+''' 2 [[Reduced-2Fe-2S-Ferredoxins]][c] '''+''' 2 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[Sulfurated-Sulfur-Acceptors]][c] '''=>''' 1 [[BIOTIN]][c] '''+''' 2 [[CH33ADO]][c] '''+''' 2 [[MET]][c] '''+''' 2 [[Oxidized-2Fe-2S-Ferredoxins]][c] '''+''' 1 [[Unsulfurated-Sulfur-Acceptors]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ07922]]
+
* Gene: [[SJ16348]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ00206]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ01760]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ01107]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY66-366]], flavin biosynthesis IV (mammalian):
+
* [[PWY0-1507]], biotin biosynthesis from 8-amino-7-oxononanoate I:
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
−
* [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants):
+
* [[PWY-7380]], biotin biosynthesis from 8-amino-7-oxononanoate II:
−
** '''8''' reactions found over '''9''' reactions in the full pathway
+
** '''2''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-6167]], flavin biosynthesis II (archaea):
 
−
** '''5''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-6168]], flavin biosynthesis III (fungi):
 
−
** '''7''' reactions found over '''9''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17238 17238]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22061 22061]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00161 R00161]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01078 R01078]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q9JVY5 Q9JVY5]
+
** [http://www.uniprot.org/uniprot/Q9JRW7 Q9JRW7]
−
** [http://www.uniprot.org/uniprot/Q9PHS7 Q9PHS7]
+
** [http://www.uniprot.org/uniprot/Q9PLZ3 Q9PLZ3]
−
** [http://www.uniprot.org/uniprot/Q59263 Q59263]
+
** [http://www.uniprot.org/uniprot/P53557 P53557]
 +
** [http://www.uniprot.org/uniprot/O67104 O67104]
 +
** [http://www.uniprot.org/uniprot/P44987 P44987]
 +
** [http://www.uniprot.org/uniprot/Q58692 Q58692]
 +
** [http://www.uniprot.org/uniprot/P0A506 P0A506]
 +
** [http://www.uniprot.org/uniprot/Q9Z6L5 Q9Z6L5]
 +
** [http://www.uniprot.org/uniprot/Q9JUE3 Q9JUE3]
 +
** [http://www.uniprot.org/uniprot/P46396 P46396]
 +
** [http://www.uniprot.org/uniprot/Q47862 Q47862]
 +
** [http://www.uniprot.org/uniprot/P19206 P19206]
 +
** [http://www.uniprot.org/uniprot/P32451 P32451]
 +
** [http://www.uniprot.org/uniprot/P54967 P54967]
 +
** [http://www.uniprot.org/uniprot/P46715 P46715]
 +
** [http://www.uniprot.org/uniprot/P73538 P73538]
 +
** [http://www.uniprot.org/uniprot/P12996 P12996]
 +
** [http://www.uniprot.org/uniprot/O59778 O59778]
 +
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=fmn adenylyltransferase}}
+
{{#set: common-name=biotin synthase}}
−
{{#set: ec-number=ec-2.7.7.2}}
+
{{#set: ec-number=ec-2.8.1.6}}
−
{{#set: nb gene associated=4}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=4}}
+
{{#set: nb pathway associated=2}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 11:26, 15 January 2021

Reaction 2.8.1.6-RXN

  • direction:
    • left-to-right
  • common-name:
    • biotin synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY0-1507, biotin biosynthesis from 8-amino-7-oxononanoate I:
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-7380, biotin biosynthesis from 8-amino-7-oxononanoate II:
    • 2 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-7647&oldid=116349"