Difference between revisions of "RXN-7657"

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(Created page with "Category:reaction == Reaction UROGENIIISYN-RXN == * direction: ** left-to-right * common-name: ** uroporphyrinogen iii synthase * ec-number: ** [http://enzyme.expasy.org/E...")
(Created page with "Category:reaction == Reaction 1.5.99.12-RXN == * direction: ** reversible * ec-number: ** [http://enzyme.expasy.org/EC/1.5.99.12 ec-1.5.99.12] == Reaction formula == * 1 [...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction UROGENIIISYN-RXN ==
+
== Reaction 1.5.99.12-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
−
* common-name:
 
−
** uroporphyrinogen iii synthase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.2.1.75 ec-4.2.1.75]
+
** [http://enzyme.expasy.org/EC/1.5.99.12 ec-1.5.99.12]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[HYDROXYMETHYLBILANE]][c] '''=>''' 1 [[UROPORPHYRINOGEN-III]][c] '''+''' 1 [[WATER]][c]
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* 1 [[Acceptor]][c] '''+''' 1 [[CPD-4209]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[ADENINE]][c] '''+''' 1 [[Donor-H2]][c] '''+''' 1 [[PRENAL]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ19532]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5189]], tetrapyrrole biosynthesis II (from glycine):
 
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** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-5188]], tetrapyrrole biosynthesis I (from glutamate):
 
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** '''6''' reactions found over '''6''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18965 18965]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13625 13625]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R03165 R03165]
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** [http://www.genome.jp/dbget-bin/www_bget?R05708 R05708]
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* UNIPROT:
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{{#set: direction=reversible}}
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** [http://www.uniprot.org/uniprot/P10746 P10746]
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{{#set: ec-number=ec-1.5.99.12}}
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** [http://www.uniprot.org/uniprot/P51163 P51163]
+
{{#set: nb gene associated=0}}
−
** [http://www.uniprot.org/uniprot/P21248 P21248]
+
{{#set: nb pathway associated=0}}
−
** [http://www.uniprot.org/uniprot/Q58401 Q58401]
+
{{#set: reconstruction category=gap-filling}}
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** [http://www.uniprot.org/uniprot/P09126 P09126]
+
{{#set: reconstruction tool=meneco}}
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** [http://www.uniprot.org/uniprot/Q59294 Q59294]
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{{#set: reconstruction comment=added for gapfilling}}
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{{#set: direction=left-to-right}}
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{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}
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{{#set: common-name=uroporphyrinogen iii synthase}}
 
−
{{#set: ec-number=ec-4.2.1.75}}
 
−
{{#set: nb gene associated=1}}
 
−
{{#set: nb pathway associated=2}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
−
{{#set: reconstruction comment=n.a}}
 
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 

Revision as of 13:18, 14 January 2021

Reaction 1.5.99.12-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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