Difference between revisions of "RXN-7677"

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(Created page with "Category:reaction == Reaction GLUTAMATE-SYNTHASE-FERREDOXIN-RXN == * direction: ** left-to-right * common-name: ** glutamate synthase (ferredoxin) * ec-number: ** [http://...")
(Created page with "Category:reaction == Reaction RXN-7677 == * direction: ** left-to-right * common-name: ** 71-hydroxychlorophyllide a monooxygenase ** chlorophyllide a oxygenase [overall]...")
 
(6 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction GLUTAMATE-SYNTHASE-FERREDOXIN-RXN ==
+
== Reaction RXN-7677 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** glutamate synthase (ferredoxin)
+
** 71-hydroxychlorophyllide a monooxygenase
−
* ec-number:
+
** chlorophyllide a oxygenase [overall]
−
** [http://enzyme.expasy.org/EC/1.4.7.1 ec-1.4.7.1]
+
** chlorophyllide b reductase
 +
* synonymous:
 +
** chlorophyll-b synthase
 +
** cao
 +
** chlorophyllide a oxygenase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[GLN]][c] '''+''' 2 [[PROTON]][c] '''+''' 2 [[Reduced-ferredoxins]][c] '''=>''' 2 [[GLT]][c] '''+''' 2 [[Oxidized-ferredoxins]][c]
+
* 1 [[CPD-7015]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CPD-19759]][c] '''+''' 1 [[NADP]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ04922]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ00278]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ07178]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ04921]]
+
* Gene: [[SJ17313]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ22311]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ22309]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ04336]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ12700]]
+
* Gene: [[SJ15075]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ13463]]
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ10812]]
+
* Gene: [[SJ08869]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ16078]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6549]], L-glutamine biosynthesis III:
+
* [[PWY-5068]], chlorophyll cycle:
−
** '''8''' reactions found over '''9''' reactions in the full pathway
+
** '''4''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-4341]], L-glutamate biosynthesis V:
 
−
** '''1''' reactions found over '''1''' reactions in the full pathway
 
−
* [[PWY-6964]], ammonia assimilation cycle II:
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR111774
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12130 12130]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22137 22137]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00021 R00021]
+
** [http://www.genome.jp/dbget-bin/www_bget?R08204 R08204]
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P23225 P23225]
 
−
** [http://www.uniprot.org/uniprot/O67512 O67512]
 
−
** [http://www.uniprot.org/uniprot/P96218 P96218]
 
−
** [http://www.uniprot.org/uniprot/Q06434 Q06434]
 
−
** [http://www.uniprot.org/uniprot/Q43081 Q43081]
 
−
** [http://www.uniprot.org/uniprot/P55037 P55037]
 
−
** [http://www.uniprot.org/uniprot/Q43155 Q43155]
 
−
** [http://www.uniprot.org/uniprot/Q7M242 Q7M242]
 
−
** [http://www.uniprot.org/uniprot/P51375 P51375]
 
−
** [http://www.uniprot.org/uniprot/P55038 P55038]
 
−
** [http://www.uniprot.org/uniprot/Q9SLM4 Q9SLM4]
 
−
** [http://www.uniprot.org/uniprot/Q08258 Q08258]
 
−
** [http://www.uniprot.org/uniprot/O49154 O49154]
 
−
** [http://www.uniprot.org/uniprot/O19906 O19906]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=glutamate synthase (ferredoxin)}}
+
{{#set: common-name=71-hydroxychlorophyllide a monooxygenase|chlorophyllide b reductase|chlorophyllide a oxygenase [overall]}}
−
{{#set: ec-number=ec-1.4.7.1}}
+
{{#set: synonymous=cao|chlorophyll-b synthase|chlorophyllide a oxygenase}}
−
{{#set: nb gene associated=5}}
+
{{#set: nb gene associated=9}}
−
{{#set: nb pathway associated=3}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:22, 18 March 2021

Reaction RXN-7677

  • direction:
    • left-to-right
  • common-name:
    • 71-hydroxychlorophyllide a monooxygenase
    • chlorophyllide a oxygenase [overall]
    • chlorophyllide b reductase
  • synonymous:
    • chlorophyll-b synthase
    • cao
    • chlorophyllide a oxygenase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5068, chlorophyll cycle:
    • 4 reactions found over 7 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR111774
  • RHEA:
  • LIGAND-RXN:

Property "Common-name" (as page type) with input value "chlorophyllide a oxygenase [overall" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.




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