Difference between revisions of "RXN-7677"

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(Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6920 PWY-6920] == * common-name: ** 6-gingerol analog biosynthesis (engineered) == Reaction(s) fo...")
(Created page with "Category:reaction == Reaction GLUTAMATE-SYNTHASE-FERREDOXIN-RXN == * direction: ** left-to-right * common-name: ** glutamate synthase (ferredoxin) * ec-number: ** [http://...")
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[[Category:pathway]]
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[[Category:reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6920 PWY-6920] ==
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== Reaction GLUTAMATE-SYNTHASE-FERREDOXIN-RXN ==
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* direction:
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** left-to-right
 
* common-name:
 
* common-name:
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** 6-gingerol analog biosynthesis (engineered)
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** glutamate synthase (ferredoxin)
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== Reaction(s) found ==
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* ec-number:
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* [[4-COUMARATE--COA-LIGASE-RXN]]
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** [http://enzyme.expasy.org/EC/1.4.7.1 ec-1.4.7.1]
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* [[R223-RXN]]
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== Reaction formula ==
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* [[RXN-12669]]
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* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[GLN]][c] '''+''' 2 [[PROTON]][c] '''+''' 2 [[Reduced-ferredoxins]][c] '''=>''' 2 [[GLT]][c] '''+''' 2 [[Oxidized-ferredoxins]][c]
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* [[RXN-14275]]
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== Gene(s) associated with this reaction  ==
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* [[RXN-14276]]
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* Gene: [[SJ04922]]
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== Reaction(s) not found ==
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** Category: [[annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12668 RXN-12668]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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{{#set: common-name=6-gingerol analog biosynthesis (engineered)}}
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** Category: [[orthology]]
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{{#set: nb reaction found=5}}
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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{{#set: completion rate=0.83}}
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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{{#set: nb total reaction=6}}
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* Gene: [[SJ04921]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* Gene: [[SJ12700]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* Gene: [[SJ13463]]
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** Category: [[orthology]]
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* Gene: [[SJ10812]]
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** Category: [[orthology]]
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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== Pathway(s) ==
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* [[PWY-6549]], L-glutamine biosynthesis III:
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** '''8''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-4341]], L-glutamate biosynthesis V:
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** '''1''' reactions found over '''1''' reactions in the full pathway
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* [[PWY-6964]], ammonia assimilation cycle II:
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** '''2''' reactions found over '''2''' reactions in the full pathway
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== Reconstruction information  ==
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* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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== External links  ==
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* RHEA:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12130 12130]
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R00021 R00021]
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/P23225 P23225]
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** [http://www.uniprot.org/uniprot/O67512 O67512]
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** [http://www.uniprot.org/uniprot/P96218 P96218]
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** [http://www.uniprot.org/uniprot/Q06434 Q06434]
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** [http://www.uniprot.org/uniprot/Q43081 Q43081]
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** [http://www.uniprot.org/uniprot/P55037 P55037]
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** [http://www.uniprot.org/uniprot/Q43155 Q43155]
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** [http://www.uniprot.org/uniprot/Q7M242 Q7M242]
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** [http://www.uniprot.org/uniprot/P51375 P51375]
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** [http://www.uniprot.org/uniprot/P55038 P55038]
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** [http://www.uniprot.org/uniprot/Q9SLM4 Q9SLM4]
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** [http://www.uniprot.org/uniprot/Q08258 Q08258]
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** [http://www.uniprot.org/uniprot/O49154 O49154]
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** [http://www.uniprot.org/uniprot/O19906 O19906]
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{{#set: direction=left-to-right}}
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{{#set: common-name=glutamate synthase (ferredoxin)}}
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{{#set: ec-number=ec-1.4.7.1}}
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{{#set: nb gene associated=5}}
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{{#set: nb pathway associated=3}}
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{{#set: reconstruction category=annotation|orthology}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: reconstruction comment=n.a}}
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{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana}}

Revision as of 20:44, 18 December 2020

Reaction GLUTAMATE-SYNTHASE-FERREDOXIN-RXN

  • direction:
    • left-to-right
  • common-name:
    • glutamate synthase (ferredoxin)
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6549, L-glutamine biosynthesis III:
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-4341, L-glutamate biosynthesis V:
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-6964, ammonia assimilation cycle II:
    • 2 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





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