Difference between revisions of "RXN-7682"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction DCMP-DEAMINASE-RXN == * direction: ** left-to-right * common-name: ** dcmp deaminase * ec-number: ** [http://enzyme.expasy.org/EC/3.5.4.12 ec...")
(Created page with "Category:reaction == Reaction RXN-7682 == * direction: ** left-to-right * common-name: ** hypoxanthine hydroxylase * ec-number: ** [http://enzyme.expasy.org/EC/1.17.1.4 ec...")
 
(5 intermediate revisions by 2 users not shown)
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction DCMP-DEAMINASE-RXN ==
+
== Reaction RXN-7682 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** dcmp deaminase
+
** hypoxanthine hydroxylase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.5.4.12 ec-3.5.4.12]
+
** [http://enzyme.expasy.org/EC/1.17.1.4 ec-1.17.1.4]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[DCMP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[DUMP]][c]
+
* 1 [[HYPOXANTHINE]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[XANTHINE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ20035]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ05673]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ05668]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ05674]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
Line 16: Line 25:
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ13100]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ05660]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ13098]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ13101]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ13095]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7210]], pyrimidine deoxyribonucleotides biosynthesis from CTP:
+
* [[P164-PWY]], purine nucleobases degradation I (anaerobic):
−
** '''8''' reactions found over '''8''' reactions in the full pathway
+
** '''6''' reactions found over '''15''' reactions in the full pathway
 +
* [[PWY-6596]], adenosine nucleotides degradation I:
 +
** '''7''' reactions found over '''8''' reactions in the full pathway
 +
* [[SALVADEHYPOX-PWY]], adenosine nucleotides degradation II:
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
Line 24: Line 57:
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR100747
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22925 22925]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24671 24671]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01663 R01663]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01768 R01768]
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P32321 P32321]
 
−
** [http://www.uniprot.org/uniprot/P00814 P00814]
 
−
** [http://www.uniprot.org/uniprot/P16006 P16006]
 
−
** [http://www.uniprot.org/uniprot/P06773 P06773]
 
−
** [http://www.uniprot.org/uniprot/O74069 O74069]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=dcmp deaminase}}
+
{{#set: common-name=hypoxanthine hydroxylase}}
−
{{#set: ec-number=ec-3.5.4.12}}
+
{{#set: ec-number=ec-1.17.1.4}}
−
{{#set: nb gene associated=1}}
+
{{#set: nb gene associated=8}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=3}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Latest revision as of 11:23, 18 March 2021

Reaction RXN-7682

  • direction:
    • left-to-right
  • common-name:
    • hypoxanthine hydroxylase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • P164-PWY, purine nucleobases degradation I (anaerobic):
    • 6 reactions found over 15 reactions in the full pathway
  • PWY-6596, adenosine nucleotides degradation I:
    • 7 reactions found over 8 reactions in the full pathway
  • SALVADEHYPOX-PWY, adenosine nucleotides degradation II:
    • 5 reactions found over 5 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR100747
  • RHEA:
  • LIGAND-RXN:





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-7682&oldid=142185"