Difference between revisions of "RXN-7682"

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(Created page with "Category:reaction == Reaction DCMP-DEAMINASE-RXN == * direction: ** left-to-right * common-name: ** dcmp deaminase * ec-number: ** [http://enzyme.expasy.org/EC/3.5.4.12 ec...")
(Created page with "Category:reaction == Reaction XYLULOKIN-RXN == * direction: ** left-to-right * common-name: ** xylulokinase * ec-number: ** [http://enzyme.expasy.org/EC/2.7.1.17 ec-2.7.1....")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction DCMP-DEAMINASE-RXN ==
+
== Reaction XYLULOKIN-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** dcmp deaminase
+
** xylulokinase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.5.4.12 ec-3.5.4.12]
+
** [http://enzyme.expasy.org/EC/2.7.1.17 ec-2.7.1.17]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[DCMP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[DUMP]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[D-XYLULOSE]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[XYLULOSE-5-PHOSPHATE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ20035]]
+
* Gene: [[SJ07151]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ12221]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7210]], pyrimidine deoxyribonucleotides biosynthesis from CTP:
+
* [[DARABITOLUTIL-PWY]], D-arabitol degradation:
−
** '''8''' reactions found over '''8''' reactions in the full pathway
+
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[LARABITOLUTIL-PWY]], xylitol degradation:
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[XYLCAT-PWY]], D-xylose degradation I:
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22925 22925]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10965 10965]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01663 R01663]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01639 R01639]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P32321 P32321]
+
** [http://www.uniprot.org/uniprot/P27156 P27156]
−
** [http://www.uniprot.org/uniprot/P00814 P00814]
+
** [http://www.uniprot.org/uniprot/Q9CFG8 Q9CFG8]
−
** [http://www.uniprot.org/uniprot/P16006 P16006]
+
** [http://www.uniprot.org/uniprot/P35850 P35850]
−
** [http://www.uniprot.org/uniprot/P06773 P06773]
+
** [http://www.uniprot.org/uniprot/P09099 P09099]
−
** [http://www.uniprot.org/uniprot/O74069 O74069]
+
** [http://www.uniprot.org/uniprot/P12867 P12867]
 +
** [http://www.uniprot.org/uniprot/P27155 P27155]
 +
** [http://www.uniprot.org/uniprot/P21939 P21939]
 +
** [http://www.uniprot.org/uniprot/P29444 P29444]
 +
** [http://www.uniprot.org/uniprot/Q9X714 Q9X714]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=dcmp deaminase}}
+
{{#set: common-name=xylulokinase}}
−
{{#set: ec-number=ec-3.5.4.12}}
+
{{#set: ec-number=ec-2.7.1.17}}
−
{{#set: nb gene associated=1}}
+
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=3}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:36, 5 January 2021

Reaction XYLULOKIN-RXN

  • direction:
    • left-to-right
  • common-name:
    • xylulokinase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • DARABITOLUTIL-PWY, D-arabitol degradation:
    • 1 reactions found over 2 reactions in the full pathway
  • LARABITOLUTIL-PWY, xylitol degradation:
    • 1 reactions found over 2 reactions in the full pathway
  • XYLCAT-PWY, D-xylose degradation I:
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





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