Difference between revisions of "RXN-7694"

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(Created page with "Category:reaction == Reaction RIBONUCLEOSIDE-DIP-REDUCTI-RXN == * direction: ** left-to-right * common-name: ** ribonucleoside-diphosphate reductase ** ribonucleoside-diph...")
(Created page with "Category:reaction == Reaction KDPGALDOL-RXN == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/4.1.2.55 ec-4.1.2.55] ** [http://enzyme.expasy.or...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RIBONUCLEOSIDE-DIP-REDUCTI-RXN ==
+
== Reaction KDPGALDOL-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
 
−
** ribonucleoside-diphosphate reductase
 
−
** ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.17.4.1 ec-1.17.4.1]
+
** [http://enzyme.expasy.org/EC/4.1.2.55 ec-4.1.2.55]
 +
** [http://enzyme.expasy.org/EC/4.1.2.14 ec-4.1.2.14]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[Red-Thioredoxin]][c] '''+''' 1 [[Ribonucleoside-Diphosphates]][c] '''=>''' 1 [[Deoxy-Ribonucleoside-Diphosphates]][c] '''+''' 1 [[Ox-Thioredoxin]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[2-KETO-3-DEOXY-6-P-GLUCONATE]][c] '''=>''' 1 [[GAP]][c] '''+''' 1 [[PYRUVATE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ03464]]
−
* Gene: [[SJ18284]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ21120]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ03698]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ20794]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ17066]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ14458]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ03697]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ21121]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ16809]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-7310]], D-glucosaminate degradation:
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-2221]], Entner-Doudoroff pathway III (semi-phosphorylative):
 +
** '''6''' reactions found over '''9''' reactions in the full pathway
 +
* [[ENTNER-DOUDOROFF-PWY]], Entner-Doudoroff shunt:
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-7562]], 3,6-anhydro-&alpha;-L-galactopyranose degradation:
 +
** '''1''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7242]], D-fructuronate degradation:
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[GALACTUROCAT-PWY]], D-galacturonate degradation I:
 +
** '''1''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6507]], 4-deoxy-L-threo-hex-4-enopyranuronate degradation:
 +
** '''1''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23254 23254]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17090 17090]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R04294 R04294]
+
** [http://www.genome.jp/dbget-bin/www_bget?R05605 R05605]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P89462 P89462]
+
** [http://www.uniprot.org/uniprot/P44480 P44480]
−
** [http://www.uniprot.org/uniprot/Q7M0K8 Q7M0K8]
+
** [http://www.uniprot.org/uniprot/P0A955 P0A955]
−
** [http://www.uniprot.org/uniprot/Q91YM8 Q91YM8]
+
** [http://www.uniprot.org/uniprot/P00885 P00885]
−
** [http://www.uniprot.org/uniprot/P09938 P09938]
+
** [http://www.uniprot.org/uniprot/Q9JR44 Q9JR44]
−
** [http://www.uniprot.org/uniprot/Q8IL94 Q8IL94]
+
** [http://www.uniprot.org/uniprot/O25729 O25729]
−
** [http://www.uniprot.org/uniprot/P32984 P32984]
+
** [http://www.uniprot.org/uniprot/Q9ZKB4 Q9ZKB4]
−
** [http://www.uniprot.org/uniprot/P50647 P50647]
+
** [http://www.uniprot.org/uniprot/O83578 O83578]
−
** [http://www.uniprot.org/uniprot/P50650 P50650]
+
** [http://www.uniprot.org/uniprot/Q9WXS1 Q9WXS1]
−
** [http://www.uniprot.org/uniprot/P50620 P50620]
+
** [http://www.uniprot.org/uniprot/P50846 P50846]
−
** [http://www.uniprot.org/uniprot/O83972 O83972]
+
** [http://www.uniprot.org/uniprot/P38448 P38448]
−
** [http://www.uniprot.org/uniprot/P43755 P43755]
+
** [http://www.uniprot.org/uniprot/Q55872 Q55872]
−
** [http://www.uniprot.org/uniprot/Q9PJ87 Q9PJ87]
+
** [http://www.uniprot.org/uniprot/P94802 P94802]
−
** [http://www.uniprot.org/uniprot/P39452 P39452]
 
−
** [http://www.uniprot.org/uniprot/O66503 O66503]
 
−
** [http://www.uniprot.org/uniprot/Q9JU45 Q9JU45]
 
−
** [http://www.uniprot.org/uniprot/P47473 P47473]
 
−
** [http://www.uniprot.org/uniprot/P37146 P37146]
 
−
** [http://www.uniprot.org/uniprot/O26748 O26748]
 
−
** [http://www.uniprot.org/uniprot/O28609 O28609]
 
−
** [http://www.uniprot.org/uniprot/Q9PIR3 Q9PIR3]
 
−
** [http://www.uniprot.org/uniprot/Q9JU43 Q9JU43]
 
−
** [http://www.uniprot.org/uniprot/P55982 P55982]
 
−
** [http://www.uniprot.org/uniprot/P03190 P03190]
 
−
** [http://www.uniprot.org/uniprot/P00452 P00452]
 
−
** [http://www.uniprot.org/uniprot/P69924 P69924]
 
−
** [http://www.uniprot.org/uniprot/P07201 P07201]
 
−
** [http://www.uniprot.org/uniprot/P26713 P26713]
 
−
** [http://www.uniprot.org/uniprot/P11158 P11158]
 
−
** [http://www.uniprot.org/uniprot/P11157 P11157]
 
−
** [http://www.uniprot.org/uniprot/P23921 P23921]
 
−
** [http://www.uniprot.org/uniprot/P31350 P31350]
 
−
** [http://www.uniprot.org/uniprot/Q60561 Q60561]
 
−
** [http://www.uniprot.org/uniprot/Q03604 Q03604]
 
−
** [http://www.uniprot.org/uniprot/P37426 P37426]
 
−
** [http://www.uniprot.org/uniprot/P17424 P17424]
 
−
** [http://www.uniprot.org/uniprot/P36602 P36602]
 
−
** [http://www.uniprot.org/uniprot/P36603 P36603]
 
−
** [http://www.uniprot.org/uniprot/P50643 P50643]
 
−
** [http://www.uniprot.org/uniprot/P50645 P50645]
 
−
** [http://www.uniprot.org/uniprot/Q66662 Q66662]
 
−
** [http://www.uniprot.org/uniprot/Q66663 Q66663]
 
−
** [http://www.uniprot.org/uniprot/P49723 P49723]
 
−
** [http://www.uniprot.org/uniprot/P50651 P50651]
 
−
** [http://www.uniprot.org/uniprot/P78027 P78027]
 
−
** [http://www.uniprot.org/uniprot/P74240 P74240]
 
−
** [http://www.uniprot.org/uniprot/O36410 O36410]
 
−
** [http://www.uniprot.org/uniprot/O36411 O36411]
 
−
** [http://www.uniprot.org/uniprot/P49730 P49730]
 
−
** [http://www.uniprot.org/uniprot/Q89941 Q89941]
 
−
** [http://www.uniprot.org/uniprot/Q98526 Q98526]
 
−
** [http://www.uniprot.org/uniprot/O41111 O41111]
 
−
** [http://www.uniprot.org/uniprot/Q9YMK7 Q9YMK7]
 
−
** [http://www.uniprot.org/uniprot/Q9YMI1 Q9YMI1]
 
−
** [http://www.uniprot.org/uniprot/Q9YMI0 Q9YMI0]
 
−
** [http://www.uniprot.org/uniprot/O57175 O57175]
 
−
** [http://www.uniprot.org/uniprot/O39262 O39262]
 
−
** [http://www.uniprot.org/uniprot/O39263 O39263]
 
−
** [http://www.uniprot.org/uniprot/Q9YTK7 Q9YTK7]
 
−
** [http://www.uniprot.org/uniprot/Q9YTK6 Q9YTK6]
 
−
** [http://www.uniprot.org/uniprot/Q9UW15 Q9UW15]
 
−
** [http://www.uniprot.org/uniprot/Q9SJ20 Q9SJ20]
 
−
** [http://www.uniprot.org/uniprot/P03175 P03175]
 
−
** [http://www.uniprot.org/uniprot/P09247 P09247]
 
−
** [http://www.uniprot.org/uniprot/P09248 P09248]
 
−
** [http://www.uniprot.org/uniprot/P28847 P28847]
 
−
** [http://www.uniprot.org/uniprot/P28846 P28846]
 
−
** [http://www.uniprot.org/uniprot/P69520 P69520]
 
−
** [http://www.uniprot.org/uniprot/Q01319 Q01319]
 
−
** [http://www.uniprot.org/uniprot/P10224 P10224]
 
−
** [http://www.uniprot.org/uniprot/P16782 P16782]
 
−
** [http://www.uniprot.org/uniprot/P20503 P20503]
 
−
** [http://www.uniprot.org/uniprot/P26685 P26685]
 
−
** [http://www.uniprot.org/uniprot/P12848 P12848]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor|ribonucleoside-diphosphate reductase}}
+
{{#set: ec-number=ec-4.1.2.55|ec-4.1.2.14}}
−
{{#set: ec-number=ec-1.17.4.1}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb gene associated=9}}
+
{{#set: nb pathway associated=7}}
−
{{#set: nb pathway associated=0}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus}}

Revision as of 13:20, 14 January 2021

Reaction KDPGALDOL-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7310, D-glucosaminate degradation:
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-2221, Entner-Doudoroff pathway III (semi-phosphorylative):
    • 6 reactions found over 9 reactions in the full pathway
  • ENTNER-DOUDOROFF-PWY, Entner-Doudoroff shunt:
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-7562, 3,6-anhydro-α-L-galactopyranose degradation:
    • 1 reactions found over 7 reactions in the full pathway
  • PWY-7242, D-fructuronate degradation:
    • 1 reactions found over 4 reactions in the full pathway
  • GALACTUROCAT-PWY, D-galacturonate degradation I:
    • 1 reactions found over 5 reactions in the full pathway
  • PWY-6507, 4-deoxy-L-threo-hex-4-enopyranuronate degradation:
    • 1 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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