Difference between revisions of "RXN-773"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=LYSOPHOSPHOLIPASE-RXN LYSOPHOSPHOLIPASE-RXN] == * direction: ** left-to-right * common-name: ** lys...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHENYLALANINE--TRNA-LIGASE-RXN PHENYLALANINE--TRNA-LIGASE-RXN] == * direction: ** left-to-right * c...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=LYSOPHOSPHOLIPASE-RXN LYSOPHOSPHOLIPASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHENYLALANINE--TRNA-LIGASE-RXN PHENYLALANINE--TRNA-LIGASE-RXN] ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** lysophospholipase
+
** phenylalanine-trna ligase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.1.1.5 ec-3.1.1.5]
+
** [http://enzyme.expasy.org/EC/6.1.1.20 ec-6.1.1.20]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[2-Lysophosphatidylcholines]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Carboxylates]][c] '''+''' 1 [[L-1-GLYCERO-PHOSPHORYLCHOLINE]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[PHE]][c] '''+''' 1 [[PHE-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-PHE-tRNAs]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* Gene: [[SJ04408]]
+
* Gene: [[SJ04988]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ03124]]
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ19560]]
+
* Gene: [[SJ07745]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ09511]]
+
* Gene: [[SJ20176]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ21109]]
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ20825]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ16853]]
+
* Gene: [[SJ10005]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ16448]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ07752]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ06461]]
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ16427]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
</div>
 
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
 +
** '''21''' reactions found over '''21''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19414 19414]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02746 R02746]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03660 R03660]
−
** [http://www.genome.jp/dbget-bin/www_bget?R07291 R07291]
 
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15177 15177]
 
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/O07427 O07427]
+
** [http://www.uniprot.org/uniprot/P94283 P94283]
−
** [http://www.uniprot.org/uniprot/Q7M3V3 Q7M3V3]
+
** [http://www.uniprot.org/uniprot/Q9ZDB4 Q9ZDB4]
−
** [http://www.uniprot.org/uniprot/P07000 P07000]
+
** [http://www.uniprot.org/uniprot/Q9WZS9 Q9WZS9]
−
** [http://www.uniprot.org/uniprot/P0ADA1 P0ADA1]
+
** [http://www.uniprot.org/uniprot/Q9PP34 Q9PP34]
−
** [http://www.uniprot.org/uniprot/P39457 P39457]
+
** [http://www.uniprot.org/uniprot/P56145 P56145]
−
** [http://www.uniprot.org/uniprot/Q03674 Q03674]
+
** [http://www.uniprot.org/uniprot/O67620 O67620]
−
** [http://www.uniprot.org/uniprot/P53541 P53541]
+
** [http://www.uniprot.org/uniprot/O73984 O73984]
−
** [http://www.uniprot.org/uniprot/P78854 P78854]
+
** [http://www.uniprot.org/uniprot/Q9Z6R6 Q9Z6R6]
−
** [http://www.uniprot.org/uniprot/O42970 O42970]
+
** [http://www.uniprot.org/uniprot/Q58508 Q58508]
−
** [http://www.uniprot.org/uniprot/Q9P327 Q9P327]
+
** [http://www.uniprot.org/uniprot/P56146 P56146]
 +
** [http://www.uniprot.org/uniprot/O27545 O27545]
 +
** [http://www.uniprot.org/uniprot/O26837 O26837]
 +
** [http://www.uniprot.org/uniprot/O58391 O58391]
 +
** [http://www.uniprot.org/uniprot/O83938 O83938]
 +
** [http://www.uniprot.org/uniprot/P47436 P47436]
 +
** [http://www.uniprot.org/uniprot/O67087 O67087]
 +
** [http://www.uniprot.org/uniprot/O83059 O83059]
 +
** [http://www.uniprot.org/uniprot/O84843 O84843]
 +
** [http://www.uniprot.org/uniprot/Q9UYX3 Q9UYX3]
 +
** [http://www.uniprot.org/uniprot/Q9Z7W0 Q9Z7W0]
 +
** [http://www.uniprot.org/uniprot/Q9PJR8 Q9PJR8]
 +
** [http://www.uniprot.org/uniprot/P47437 P47437]
 +
** [http://www.uniprot.org/uniprot/Q9ZKF9 Q9ZKF9]
 +
** [http://www.uniprot.org/uniprot/Q9UYX2 Q9UYX2]
 +
** [http://www.uniprot.org/uniprot/Q9ZKF8 Q9ZKF8]
 +
** [http://www.uniprot.org/uniprot/Q9JR76 Q9JR76]
 +
** [http://www.uniprot.org/uniprot/Q57911 Q57911]
 +
** [http://www.uniprot.org/uniprot/P43819 P43819]
 +
** [http://www.uniprot.org/uniprot/P94282 P94282]
 +
** [http://www.uniprot.org/uniprot/O84481 O84481]
 +
** [http://www.uniprot.org/uniprot/Q9ZDB5 Q9ZDB5]
 +
** [http://www.uniprot.org/uniprot/Q9WZS8 Q9WZS8]
 +
** [http://www.uniprot.org/uniprot/Q9RRX8 Q9RRX8]
 +
** [http://www.uniprot.org/uniprot/Q9PP35 Q9PP35]
 +
** [http://www.uniprot.org/uniprot/P43820 P43820]
 +
** [http://www.uniprot.org/uniprot/Q46107 Q46107]
 +
** [http://www.uniprot.org/uniprot/P15434 P15434]
 +
** [http://www.uniprot.org/uniprot/Q5SGX1 Q5SGX1]
 +
** [http://www.uniprot.org/uniprot/P37984 P37984]
 +
** [http://www.uniprot.org/uniprot/P51346 P51346]
 +
** [http://www.uniprot.org/uniprot/P75563 P75563]
 +
** [http://www.uniprot.org/uniprot/P75564 P75564]
 +
** [http://www.uniprot.org/uniprot/Q55187 Q55187]
 +
** [http://www.uniprot.org/uniprot/P95960 P95960]
 +
** [http://www.uniprot.org/uniprot/P95961 P95961]
 +
** [http://www.uniprot.org/uniprot/Q49032 Q49032]
 +
** [http://www.uniprot.org/uniprot/P08312 P08312]
 +
** [http://www.uniprot.org/uniprot/P07395 P07395]
 +
** [http://www.uniprot.org/uniprot/O42870 O42870]
 +
** [http://www.uniprot.org/uniprot/O13432 O13432]
 +
** [http://www.uniprot.org/uniprot/Q9GYS8 Q9GYS8]
 +
** [http://www.uniprot.org/uniprot/O42849 O42849]
 +
** [http://www.uniprot.org/uniprot/P17921 P17921]
 +
** [http://www.uniprot.org/uniprot/P17922 P17922]
 +
** [http://www.uniprot.org/uniprot/P15625 P15625]
 +
** [http://www.uniprot.org/uniprot/P08425 P08425]
 +
** [http://www.uniprot.org/uniprot/P15624 P15624]
 +
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=lysophospholipase}}
+
{{#set: common-name=phenylalanine-trna ligase}}
−
{{#set: ec-number=ec-3.1.1.5}}
+
{{#set: ec-number=ec-6.1.1.20}}
−
{{#set: nb gene associated=10}}
+
{{#set: nb gene associated=5}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Revision as of 09:30, 27 August 2019

Reaction PHENYLALANINE--TRNA-LIGASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • phenylalanine-trna ligase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-773&oldid=36070"