Difference between revisions of "RXN-773"

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(Created page with "Category:reaction == Reaction TRANSALDOL-RXN == * direction: ** reversible * common-name: ** transaldolase * ec-number: ** [http://enzyme.expasy.org/EC/2.2.1.2 ec-2.2.1.2]...")
(Created page with "Category:reaction == Reaction 3.4.21.4-RXN == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/3.4.21.4 ec-3.4.21.4] == Reaction formula == * 1 [...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction TRANSALDOL-RXN ==
+
== Reaction 3.4.21.4-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
−
* common-name:
 
−
** transaldolase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.2.1.2 ec-2.2.1.2]
+
** [http://enzyme.expasy.org/EC/3.4.21.4 ec-3.4.21.4]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[D-SEDOHEPTULOSE-7-P]][c] '''+''' 1 [[GAP]][c] '''<=>''' 1 [[ERYTHROSE-4P]][c] '''+''' 1 [[FRUCTOSE-6P]][c]
+
* 1 [[General-Protein-Substrates]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Peptides-holder]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ12204]]
+
* Gene: [[SJ12361]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ18265]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-1861]], formaldehyde assimilation II (assimilatory RuMP Cycle):
 
−
** '''7''' reactions found over '''9''' reactions in the full pathway
 
−
* [[P124-PWY]], Bifidobacterium shunt:
 
−
** '''12''' reactions found over '''15''' reactions in the full pathway
 
−
* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle):
 
−
** '''11''' reactions found over '''12''' reactions in the full pathway
 
−
* [[NONOXIPENT-PWY]], pentose phosphate pathway (non-oxidative branch):
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-5723]], Rubisco shunt:
 
−
** '''10''' reactions found over '''10''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17056 17056]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R01827 R01827]
 
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P17441 P17441]
+
** [http://www.uniprot.org/uniprot/P07477 P07477]
−
** [http://www.uniprot.org/uniprot/P17440 P17440]
+
** [http://www.uniprot.org/uniprot/P08426 P08426]
−
** [http://www.uniprot.org/uniprot/P37837 P37837]
+
** [http://www.uniprot.org/uniprot/P35051 P35051]
−
** [http://www.uniprot.org/uniprot/P45055 P45055]
+
** [http://www.uniprot.org/uniprot/P19799 P19799]
−
** [http://www.uniprot.org/uniprot/Q9JSU1 Q9JSU1]
+
** [http://www.uniprot.org/uniprot/Q7M434 Q7M434]
−
** [http://www.uniprot.org/uniprot/P0A867 P0A867]
+
** [http://www.uniprot.org/uniprot/Q7M435 Q7M435]
−
** [http://www.uniprot.org/uniprot/Q9PIL5 Q9PIL5]
+
** [http://www.uniprot.org/uniprot/Q7M390 Q7M390]
−
** [http://www.uniprot.org/uniprot/Q58370 Q58370]
+
** [http://www.uniprot.org/uniprot/Q7LZP8 Q7LZP8]
−
** [http://www.uniprot.org/uniprot/P34214 P34214]
+
** [http://www.uniprot.org/uniprot/Q7LZF8 Q7LZF8]
−
** [http://www.uniprot.org/uniprot/P0A870 P0A870]
+
** [http://www.uniprot.org/uniprot/Q7M433 Q7M433]
−
** [http://www.uniprot.org/uniprot/P15019 P15019]
+
** [http://www.uniprot.org/uniprot/P07146 P07146]
−
** [http://www.uniprot.org/uniprot/P53228 P53228]
+
** [http://www.uniprot.org/uniprot/P07478 P07478]
−
** [http://www.uniprot.org/uniprot/P51778 P51778]
+
** [http://www.uniprot.org/uniprot/Q7M3N1 Q7M3N1]
−
** [http://www.uniprot.org/uniprot/P72797 P72797]
+
** [http://www.uniprot.org/uniprot/Q7M432 Q7M432]
−
** [http://www.uniprot.org/uniprot/O04894 O04894]
+
** [http://www.uniprot.org/uniprot/P32821 P32821]
−
** [http://www.uniprot.org/uniprot/P78865 P78865]
+
** [http://www.uniprot.org/uniprot/P32822 P32822]
 +
** [http://www.uniprot.org/uniprot/P12788 P12788]
 +
** [http://www.uniprot.org/uniprot/P35050 P35050]
 +
** [http://www.uniprot.org/uniprot/Q29463 Q29463]
 +
** [http://www.uniprot.org/uniprot/P35034 P35034]
 +
** [http://www.uniprot.org/uniprot/P35031 P35031]
 +
** [http://www.uniprot.org/uniprot/P35032 P35032]
 +
** [http://www.uniprot.org/uniprot/P35033 P35033]
 +
** [http://www.uniprot.org/uniprot/P35030 P35030]
 +
** [http://www.uniprot.org/uniprot/P35035 P35035]
 +
** [http://www.uniprot.org/uniprot/P35036 P35036]
 +
** [http://www.uniprot.org/uniprot/P16049 P16049]
 +
** [http://www.uniprot.org/uniprot/Q91041 Q91041]
 +
** [http://www.uniprot.org/uniprot/P35038 P35038]
 +
** [http://www.uniprot.org/uniprot/P35041 P35041]
 +
** [http://www.uniprot.org/uniprot/P35037 P35037]
 +
** [http://www.uniprot.org/uniprot/Q92099 Q92099]
 +
** [http://www.uniprot.org/uniprot/Q27761 Q27761]
 +
** [http://www.uniprot.org/uniprot/Q90629 Q90629]
 +
** [http://www.uniprot.org/uniprot/Q90628 Q90628]
 +
** [http://www.uniprot.org/uniprot/Q90627 Q90627]
 +
** [http://www.uniprot.org/uniprot/Q7M436 Q7M436]
 +
** [http://www.uniprot.org/uniprot/P35045 P35045]
 +
** [http://www.uniprot.org/uniprot/P00765 P00765]
 +
** [http://www.uniprot.org/uniprot/P00764 P00764]
 +
** [http://www.uniprot.org/uniprot/P06872 P06872]
 +
** [http://www.uniprot.org/uniprot/P06871 P06871]
 +
** [http://www.uniprot.org/uniprot/P00761 P00761]
 +
** [http://www.uniprot.org/uniprot/P00762 P00762]
 +
** [http://www.uniprot.org/uniprot/P00763 P00763]
 +
** [http://www.uniprot.org/uniprot/P00775 P00775]
 
</div>
 
</div>
−
{{#set: direction=reversible}}
+
{{#set: direction=left-to-right}}
−
{{#set: common-name=transaldolase}}
+
{{#set: ec-number=ec-3.4.21.4}}
−
{{#set: ec-number=ec-2.2.1.2}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb pathway associated=0}}
−
{{#set: nb pathway associated=5}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:31, 5 January 2021

Reaction 3.4.21.4-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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