Difference between revisions of "RXN-7811"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8660 RXN-8660] == * direction: ** left-to-right * common-name: ** [histone-h3]-lysine-36 demeth...")
 
(Created page with "Category:reaction == Reaction RXN-7811 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/2.5.1.136 ec-2.5.1.136] == Reaction formula == * 1 3...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8660 RXN-8660] ==
+
== Reaction RXN-7811 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
+
* ec-number:
−
** [histone-h3]-lysine-36 demethylase
+
** [http://enzyme.expasy.org/EC/2.5.1.136 ec-2.5.1.136]
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** histone demethylase activity (h3-k36 specific)
 
−
* synonymous:
 
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** protein-6-n,6-n-dimethyl-l-lysine,2-oxoglutarate:oxygen oxidoreductase
 
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** histone demethylase
 
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** jmjc domain-containing histone demethylase 1a
 
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** histone-lysine (h3-k36) demethylase
 
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** h3-k36-specific demethylase
 
−
** jhdm1a
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[CPD-8900]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CPD-8901]][c] '''+''' 1 [[FORMALDEHYDE]][c] '''+''' 1 [[SUC]][c]
+
* 1 [[3-METHYL-1-246-TRIHYDROXYPHENYLBUTAN]][c] '''+''' 1 [[CPD-4211]][c] '''=>''' 1 [[CPD-7109]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ05371]]
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* Gene: [[SJ09945]]
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** Category: [[annotation]]
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** Category: [[orthology]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* Gene: [[SJ13421]]
 
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** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[SJ18735]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[SJ19354]]
 
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** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
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* Gene: [[SJ00708]]
 
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** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ19102]]
 
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** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-5808]], hyperforin and adhyperforin biosynthesis:
 +
** '''3''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-5132]], lupulone and humulone biosynthesis:
 +
** '''2''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR122046
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21789 21789]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=51765 51765]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
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{{#set: common-name=histone demethylase activity (h3-k36 specific)|[histone-h3]-lysine-36 demethylase}}
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{{#set: ec-number=ec-2.5.1.136}}
−
{{#set: synonymous=histone-lysine (h3-k36) demethylase|jmjc domain-containing histone demethylase 1a|histone demethylase|protein-6-n,6-n-dimethyl-l-lysine,2-oxoglutarate:oxygen oxidoreductase|jhdm1a|h3-k36-specific demethylase}}
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{{#set: nb gene associated=1}}
−
{{#set: nb gene associated=6}}
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{{#set: nb pathway associated=2}}
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{{#set: nb pathway associated=0}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction tool=pathwaytools}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus}}

Latest revision as of 11:21, 18 March 2021

Reaction RXN-7811

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5808, hyperforin and adhyperforin biosynthesis:
    • 3 reactions found over 8 reactions in the full pathway
  • PWY-5132, lupulone and humulone biosynthesis:
    • 2 reactions found over 6 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR122046
  • RHEA:





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