Difference between revisions of "RXN-7904"
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(Created page with "Category:reaction == Reaction RXN-18204 == * direction: ** reversible == Reaction formula == * 1 CPDQT-38[c] '''+''' 1 NAD[c] '''<=>''' 1 CPD-19489[c] '''+'''...") |
(Created page with "Category:reaction == Reaction RXN-7904 == * direction: ** left-to-right * common-name: ** acyl-coa synthetase ** long-chain fatty acid-coa ligase * ec-number: ** [http://e...") |
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[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction RXN- | + | == Reaction RXN-7904 == |
* direction: | * direction: | ||
− | ** | + | ** left-to-right |
+ | * common-name: | ||
+ | ** acyl-coa synthetase | ||
+ | ** long-chain fatty acid-coa ligase | ||
+ | * ec-number: | ||
+ | ** [http://enzyme.expasy.org/EC/6.2.1.3 ec-6.2.1.3] | ||
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[Long-Chain-Fatty-Acids]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Long-Chain-Acyl-CoAs]][c] '''+''' 1 [[PPI]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
+ | * Gene: [[SJ08692]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | * Gene: [[SJ13972]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ05591]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ03650]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ08691]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ08690]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | </div> | ||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[ | + | * [[PWY-6873]], long chain fatty acid ester synthesis (engineered): |
− | ** ''' | + | ** '''2''' reactions found over '''4''' reactions in the full pathway |
+ | * [[PWY-7033]], alkane biosynthesis II: | ||
+ | ** '''1''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PWY-6803]], phosphatidylcholine acyl editing: | ||
+ | ** '''4''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-5885]], wax esters biosynthesis II: | ||
+ | ** '''2''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-5143]], long-chain fatty acid activation: | ||
+ | ** '''1''' reactions found over '''1''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
== External links == | == External links == | ||
− | * METANETX-RXN : | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
− | {{#set: direction= | + | * METANETX-RXN : MNXR122084 |
− | {{#set: nb gene associated= | + | * RHEA: |
− | {{#set: nb pathway associated= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15422 15422] |
− | {{#set: reconstruction category=annotation}} | + | * UNIPROT: |
− | {{#set: reconstruction tool=pathwaytools}} | + | ** [http://www.uniprot.org/uniprot/O60135 O60135] |
+ | ** [http://www.uniprot.org/uniprot/Q9X7Z0 Q9X7Z0] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9X7Y5 Q9X7Y5] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9ZBW6 Q9ZBW6] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9T0A0 Q9T0A0] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9T009 Q9T009] | ||
+ | ** [http://www.uniprot.org/uniprot/Q96338 Q96338] | ||
+ | ** [http://www.uniprot.org/uniprot/Q96538 Q96538] | ||
+ | ** [http://www.uniprot.org/uniprot/Q96537 Q96537] | ||
+ | ** [http://www.uniprot.org/uniprot/O15840 O15840] | ||
+ | ** [http://www.uniprot.org/uniprot/O81614 O81614] | ||
+ | ** [http://www.uniprot.org/uniprot/P73004 P73004] | ||
+ | ** [http://www.uniprot.org/uniprot/P47912 P47912] | ||
+ | ** [http://www.uniprot.org/uniprot/Q8JZR0 Q8JZR0] | ||
+ | ** [http://www.uniprot.org/uniprot/P69452 P69452] | ||
+ | ** [http://www.uniprot.org/uniprot/P69451 P69451] | ||
+ | ** [http://www.uniprot.org/uniprot/Q02602 Q02602] | ||
+ | ** [http://www.uniprot.org/uniprot/P30624 P30624] | ||
+ | ** [http://www.uniprot.org/uniprot/P33124 P33124] | ||
+ | ** [http://www.uniprot.org/uniprot/P33121 P33121] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JYJ7 Q9JYJ7] | ||
+ | ** [http://www.uniprot.org/uniprot/O51539 O51539] | ||
+ | ** [http://www.uniprot.org/uniprot/O30039 O30039] | ||
+ | ** [http://www.uniprot.org/uniprot/P44446 P44446] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JTK0 Q9JTK0] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9CHR0 Q9CHR0] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9YCF0 Q9YCF0] | ||
+ | ** [http://www.uniprot.org/uniprot/P94547 P94547] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9RTR4 Q9RTR4] | ||
+ | ** [http://www.uniprot.org/uniprot/O83181 O83181] | ||
+ | ** [http://www.uniprot.org/uniprot/Q10776 Q10776] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9RYK3 Q9RYK3] | ||
+ | ** [http://www.uniprot.org/uniprot/P39002 P39002] | ||
+ | ** [http://www.uniprot.org/uniprot/O51162 O51162] | ||
+ | ** [http://www.uniprot.org/uniprot/P39518 P39518] | ||
+ | ** [http://www.uniprot.org/uniprot/P18163 P18163] | ||
+ | * PIR: | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A36275 A36275] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A54901 A54901] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A70117 A70117] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B54901 B54901] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B75585 B75585] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C70762 C70762] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C71361 C71361] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C75364 C75364] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=D69649 D69649] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=D72605 D72605] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F86707 F86707] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G81798 G81798] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H64041 H64041] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H69274 H69274] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H70173 H70173] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H81068 H81068] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JE0262 JE0262] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JX0202 JX0202] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JX0205 JX0205] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S23052 S23052] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S23467 S23467] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S41589 S41589] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S49487 S49487] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S56060 S56060] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S74984 S74984] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T01875 T01875] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T02834 T02834] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07928 T07928] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07929 T07929] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07944 T07944] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T08182 T08182] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T08904 T08904] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T34994 T34994] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T35430 T35430] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T35513 T35513] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T39766 T39766] | ||
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R00390 R00390] | ||
+ | </div> | ||
+ | {{#set: direction=left-to-right}} | ||
+ | {{#set: common-name=acyl-coa synthetase|long-chain fatty acid-coa ligase}} | ||
+ | {{#set: ec-number=ec-6.2.1.3}} | ||
+ | {{#set: nb gene associated=6}} | ||
+ | {{#set: nb pathway associated=5}} | ||
+ | {{#set: reconstruction category=orthology|annotation}} | ||
+ | {{#set: reconstruction tool=pathwaytools|pantograph}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=saccharina_japonica_genome}} | + | {{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}} |
Latest revision as of 11:21, 18 March 2021
Contents
Reaction RXN-7904
- direction:
- left-to-right
- common-name:
- acyl-coa synthetase
- long-chain fatty acid-coa ligase
- ec-number:
Reaction formula
- 1 ATP[c] + 1 CO-A[c] + 1 Long-Chain-Fatty-Acids[c] => 1 AMP[c] + 1 Long-Chain-Acyl-CoAs[c] + 1 PPI[c]
Gene(s) associated with this reaction
- Gene: SJ08692
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ13972
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ05591
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ03650
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ08691
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ08690
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-6873, long chain fatty acid ester synthesis (engineered):
- 2 reactions found over 4 reactions in the full pathway
- PWY-7033, alkane biosynthesis II:
- 1 reactions found over 3 reactions in the full pathway
- PWY-6803, phosphatidylcholine acyl editing:
- 4 reactions found over 4 reactions in the full pathway
- PWY-5885, wax esters biosynthesis II:
- 2 reactions found over 4 reactions in the full pathway
- PWY-5143, long-chain fatty acid activation:
- 1 reactions found over 1 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
External links
- METANETX-RXN : MNXR122084
- RHEA:
- UNIPROT:
- PIR:
- LIGAND-RXN: