Difference between revisions of "RXN-7919"
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(Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=MANNIDEG-PWY MANNIDEG-PWY] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-2 t...") |
(Created page with "Category:reaction == Reaction DIPHOSPHOMEVALONTE-DECARBOXYLASE-RXN == * direction: ** left-to-right * common-name: ** diphosphomevalonate decarboxylase * ec-number: ** [ht...") |
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| Line 1: | Line 1: | ||
| − | [[Category: | + | [[Category:reaction]] |
| − | == | + | == Reaction DIPHOSPHOMEVALONTE-DECARBOXYLASE-RXN == |
| − | * | + | * direction: |
| − | ** | + | ** left-to-right |
| − | |||
| − | |||
* common-name: | * common-name: | ||
| − | ** | + | ** diphosphomevalonate decarboxylase |
| − | == Reaction(s) | + | * ec-number: |
| − | * [[ | + | ** [http://enzyme.expasy.org/EC/4.1.1.33 ec-4.1.1.33] |
| − | == | + | == Reaction formula == |
| − | + | * 1 [[ATP]][c] '''+''' 1 [[CPD-641]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[DELTA3-ISOPENTENYL-PP]][c] '''+''' 1 [[Pi]][c] | |
| − | {{#set: | + | == Gene(s) associated with this reaction == |
| − | {{#set: common-name= | + | * Gene: [[SJ05356]] |
| − | {{#set: nb | + | ** Category: [[annotation]] |
| − | {{#set: | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a |
| − | {{#set: | + | ** Category: [[orthology]] |
| + | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
| + | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
| + | == Pathway(s) == | ||
| + | * [[PWY-7391]], isoprene biosynthesis II (engineered): | ||
| + | ** '''7''' reactions found over '''8''' reactions in the full pathway | ||
| + | * [[PWY-922]], mevalonate pathway I: | ||
| + | ** '''7''' reactions found over '''7''' reactions in the full pathway | ||
| + | == Reconstruction information == | ||
| + | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
| + | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| + | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| + | == External links == | ||
| + | * RHEA: | ||
| + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23733 23733] | ||
| + | * LIGAND-RXN: | ||
| + | ** [http://www.genome.jp/dbget-bin/www_bget?R01121 R01121] | ||
| + | * UNIPROT: | ||
| + | ** [http://www.uniprot.org/uniprot/P32377 P32377] | ||
| + | ** [http://www.uniprot.org/uniprot/Q9U2A1 Q9U2A1] | ||
| + | ** [http://www.uniprot.org/uniprot/Q9U294 Q9U294] | ||
| + | ** [http://www.uniprot.org/uniprot/O13963 O13963] | ||
| + | ** [http://www.uniprot.org/uniprot/Q9M381 Q9M381] | ||
| + | ** [http://www.uniprot.org/uniprot/O23722 O23722] | ||
| + | {{#set: direction=left-to-right}} | ||
| + | {{#set: common-name=diphosphomevalonate decarboxylase}} | ||
| + | {{#set: ec-number=ec-4.1.1.33}} | ||
| + | {{#set: nb gene associated=1}} | ||
| + | {{#set: nb pathway associated=2}} | ||
| + | {{#set: reconstruction category=annotation|orthology}} | ||
| + | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
| + | {{#set: reconstruction comment=n.a}} | ||
| + | {{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana}} | ||
Revision as of 20:45, 18 December 2020
Contents
Reaction DIPHOSPHOMEVALONTE-DECARBOXYLASE-RXN
- direction:
- left-to-right
- common-name:
- diphosphomevalonate decarboxylase
- ec-number:
Reaction formula
- 1 ATP[c] + 1 CPD-641[c] => 1 ADP[c] + 1 CARBON-DIOXIDE[c] + 1 DELTA3-ISOPENTENYL-PP[c] + 1 Pi[c]
Gene(s) associated with this reaction
- Gene: SJ05356
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-7391, isoprene biosynthesis II (engineered):
- 7 reactions found over 8 reactions in the full pathway
- PWY-922, mevalonate pathway I:
- 7 reactions found over 7 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
External links
