Difference between revisions of "RXN-7948"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.7.1.140-RXN 2.7.1.140-RXN] == * direction: ** left-to-right * common-name: ** inositol 1,3,4,6-te...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5398 RXN0-5398] == * direction: ** reversible * common-name: ** pseudouridine-5'-phosphate gly...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.7.1.140-RXN 2.7.1.140-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5398 RXN0-5398] ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** inositol 1,3,4,6-tetrakisphosphate 5-kinase
+
** pseudouridine-5'-phosphate glycosidase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.7.1.140 ec-2.7.1.140]
+
** [http://enzyme.expasy.org/EC/4.2.1.70 ec-4.2.1.70]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[CPD-505]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[CPD-1107]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[CPD-15317]][c] '''+''' 1 [[URACIL]][c] '''<=>''' 1 [[PSEUDOURIDINE-5-P]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ22245]]
+
* Gene: [[SJ04700]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6362]], 1D-myo-inositol hexakisphosphate biosynthesis II (mammalian): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6362 PWY-6362]
+
* [[PWY-6019]], pseudouridine degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6019 PWY-6019]
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
** '''2''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-6372]], 1D-myo-inositol hexakisphosphate biosynthesis IV (Dictyostelium): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6372 PWY-6372]
 
−
** '''3''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-6554]], 1D-myo-inositol hexakisphosphate biosynthesis V (from Ins(1,3,4)P3): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6554 PWY-6554]
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-6365]], D-myo-inositol (3,4,5,6)-tetrakisphosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6365 PWY-6365]
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-6366]], D-myo-inositol (1,4,5,6)-tetrakisphosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6366 PWY-6366]
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12718 12718]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18340 18340]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q9JWF1 Q9JWF1]
 +
** [http://www.uniprot.org/uniprot/Q9JTX5 Q9JTX5]
 +
** [http://www.uniprot.org/uniprot/Q9PPJ9 Q9PPJ9]
 +
** [http://www.uniprot.org/uniprot/Q9CGH0 Q9CGH0]
 +
** [http://www.uniprot.org/uniprot/Q9CI80 Q9CI80]
 +
** [http://www.uniprot.org/uniprot/Q9JX44 Q9JX44]
 +
** [http://www.uniprot.org/uniprot/Q9V1A5 Q9V1A5]
 +
** [http://www.uniprot.org/uniprot/Q9PP96 Q9PP96]
 +
** [http://www.uniprot.org/uniprot/Q9PN18 Q9PN18]
 +
** [http://www.uniprot.org/uniprot/Q9PJ89 Q9PJ89]
 +
** [http://www.uniprot.org/uniprot/Q9PNJ2 Q9PNJ2]
 +
** [http://www.uniprot.org/uniprot/Q9PLW9 Q9PLW9]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03478 R03478]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01055 R01055]
−
{{#set: direction=left-to-right}}
+
{{#set: direction=reversible}}
−
{{#set: common-name=inositol 1,3,4,6-tetrakisphosphate 5-kinase}}
+
{{#set: common-name=pseudouridine-5'-phosphate glycosidase}}
−
{{#set: ec-number=ec-2.7.1.140}}
+
{{#set: ec-number=ec-4.2.1.70}}
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=5}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Revision as of 09:31, 27 August 2019

Reaction RXN0-5398

  • direction:
    • reversible
  • common-name:
    • pseudouridine-5'-phosphate glycosidase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6019, pseudouridine degradation: PWY-6019
    • 2 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





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