Difference between revisions of "RXN-7968"

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(Created page with "Category:reaction == Reaction CYTOCHROME-B5-REDUCTASE-RXN == * direction: ** left-to-right * common-name: ** nadh-dependent cytochrome b5 reductase ** cytochrome-b5 reduct...")
(Created page with "Category:reaction == Reaction RXN-12519 == * direction: ** reversible * common-name: ** peroxisomal 3,2-trans-enoyl-coa isomerase * ec-number: ** [http://enzyme.expasy.org...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction CYTOCHROME-B5-REDUCTASE-RXN ==
+
== Reaction RXN-12519 ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** nadh-dependent cytochrome b5 reductase
+
** peroxisomal 3,2-trans-enoyl-coa isomerase
−
** cytochrome-b5 reductase activity, acting on nad(p)h
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.6.2.2 ec-1.6.2.2]
+
** [http://enzyme.expasy.org/EC/5.3.3.8 ec-5.3.3.8]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 2 [[FERRICYTOCHROME-B5]][c] '''+''' 1 [[NADH]][c] '''=>''' 2 [[FERROCYTOCHROME-B5]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[trans-2-cis-5-dienoyl-CoA]][c] '''<=>''' 1 [[trans-3-cis-5-dienoyl-CoA]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ11169]]
−
* Gene: [[SJ06442]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ19008]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ02358]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ13718]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ07211]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ09265]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-6837]], fatty acid &beta;-oxidation V (unsaturated, odd number, di-isomerase-dependent):
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=reversible}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=46681 46681]
+
{{#set: common-name=peroxisomal 3,2-trans-enoyl-coa isomerase}}
−
* LIGAND-RXN:
+
{{#set: ec-number=ec-5.3.3.8}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R00100 R00100]
+
{{#set: nb gene associated=2}}
−
* UNIPROT:
+
{{#set: nb pathway associated=1}}
−
** [http://www.uniprot.org/uniprot/P07514 P07514]
+
{{#set: reconstruction category=annotation}}
−
** [http://www.uniprot.org/uniprot/P00387 P00387]
+
{{#set: reconstruction tool=pathwaytools}}
−
** [http://www.uniprot.org/uniprot/P20070 P20070]
 
−
** [http://www.uniprot.org/uniprot/P36060 P36060]
 
−
** [http://www.uniprot.org/uniprot/P38626 P38626]
 
−
** [http://www.uniprot.org/uniprot/O13809 O13809]
 
−
** [http://www.uniprot.org/uniprot/Q9ZNT1 Q9ZNT1]
 
−
{{#set: direction=left-to-right}}
 
−
{{#set: common-name=cytochrome-b5 reductase activity, acting on nad(p)h|nadh-dependent cytochrome b5 reductase}}
 
−
{{#set: ec-number=ec-1.6.2.2}}
 
−
{{#set: nb gene associated=5}}
 
−
{{#set: nb pathway associated=0}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 13:13, 14 January 2021

Reaction RXN-12519

  • direction:
    • reversible
  • common-name:
    • peroxisomal 3,2-trans-enoyl-coa isomerase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6837, fatty acid β-oxidation V (unsaturated, odd number, di-isomerase-dependent):
    • 4 reactions found over 5 reactions in the full pathway

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-7968&oldid=87933"