Difference between revisions of "RXN-7984"

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(Created page with "Category:reaction == Reaction PYRUVATEORTHOPHOSPHATE-DIKINASE-RXN == * direction: ** reversible * common-name: ** pyruvate phosphate dikinase * ec-number: ** [http://enzym...")
(Created page with "Category:reaction == Reaction ExchangeSeed-NA+ == * direction: ** reversible == Reaction formula == * 1.0 NA+[C-BOUNDARY] '''<=>''' 1.0 NA+[e] == Gene(s) associate...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction PYRUVATEORTHOPHOSPHATE-DIKINASE-RXN ==
+
== Reaction ExchangeSeed-NA+ ==
 
* direction:
 
* direction:
 
** reversible
 
** reversible
−
* common-name:
 
−
** pyruvate phosphate dikinase
 
−
* ec-number:
 
−
** [http://enzyme.expasy.org/EC/2.7.9.1 ec-2.7.9.1]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[PYRUVATE]][c] '''+''' 1 [[Pi]][c] '''<=>''' 1 [[AMP]][c] '''+''' 1 [[PHOSPHO-ENOL-PYRUVATE]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[PROTON]][c]
+
* 1.0 [[NA+]][C-BOUNDARY] '''<=>''' 1.0 [[NA+]][e]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ06759]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-241]], C4 photosynthetic carbon assimilation cycle, NADP-ME type:
 
−
** '''5''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-6549]], L-glutamine biosynthesis III:
 
−
** '''8''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-7117]], C4 photosynthetic carbon assimilation cycle, PEPCK type:
 
−
** '''10''' reactions found over '''12''' reactions in the full pathway
 
−
* [[PWY-7115]], C4 photosynthetic carbon assimilation cycle, NAD-ME type:
 
−
** '''9''' reactions found over '''10''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[manual]]; source: [[import_from_medium]]; tool: [[curation]]; comment: added to manage seeds from boundary to extracellular compartment
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10756 10756]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00206 R00206]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/Q7M0I6 Q7M0I6]
 
−
** [http://www.uniprot.org/uniprot/O23404 O23404]
 
−
** [http://www.uniprot.org/uniprot/Q9WYA9 Q9WYA9]
 
−
** [http://www.uniprot.org/uniprot/P22983 P22983]
 
−
** [http://www.uniprot.org/uniprot/Q41846 Q41846]
 
−
** [http://www.uniprot.org/uniprot/Q42367 Q42367]
 
−
** [http://www.uniprot.org/uniprot/Q42368 Q42368]
 
−
** [http://www.uniprot.org/uniprot/P22221 P22221]
 
−
** [http://www.uniprot.org/uniprot/P37213 P37213]
 
−
** [http://www.uniprot.org/uniprot/Q42736 Q42736]
 
−
** [http://www.uniprot.org/uniprot/Q42910 Q42910]
 
−
** [http://www.uniprot.org/uniprot/Q39734 Q39734]
 
−
** [http://www.uniprot.org/uniprot/Q39735 Q39735]
 
−
** [http://www.uniprot.org/uniprot/O24612 O24612]
 
−
** [http://www.uniprot.org/uniprot/O85840 O85840]
 
−
</div>
 
 
{{#set: direction=reversible}}
 
{{#set: direction=reversible}}
−
{{#set: common-name=pyruvate phosphate dikinase}}
+
{{#set: nb gene associated=0}}
−
{{#set: ec-number=ec-2.7.9.1}}
+
{{#set: nb pathway associated=0}}
−
{{#set: nb gene associated=1}}
+
{{#set: reconstruction category=manual}}
−
{{#set: nb pathway associated=4}}
+
{{#set: reconstruction tool=curation}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction comment=added to manage seeds from boundary to extracellular compartment}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction source=import_from_medium}}
−
{{#set: reconstruction comment=n.a}}
 
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 

Revision as of 19:01, 14 January 2021

Reaction ExchangeSeed-NA+

  • direction:
    • reversible

Reaction formula

  • 1.0 NA+[C-BOUNDARY] <=> 1.0 NA+[e]

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-7984&oldid=101601"