Difference between revisions of "RXN-7984"

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(Created page with "Category:reaction == Reaction ExchangeSeed-NA+ == * direction: ** reversible == Reaction formula == * 1.0 NA+[C-BOUNDARY] '''<=>''' 1.0 NA+[e] == Gene(s) associate...")
(Created page with "Category:reaction == Reaction SUPEROX-DISMUT-RXN == * direction: ** left-to-right * common-name: ** superoxide dismutase * ec-number: ** [http://enzyme.expasy.org/EC/1.15....")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ExchangeSeed-NA+ ==
+
== Reaction SUPEROX-DISMUT-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 +
* common-name:
 +
** superoxide dismutase
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/1.15.1.1 ec-1.15.1.1]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1.0 [[NA+]][C-BOUNDARY] '''<=>''' 1.0 [[NA+]][e]
+
* 2 [[PROTON]][c] '''+''' 2 [[SUPER-OXIDE]][c] '''=>''' 1 [[HYDROGEN-PEROXIDE]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ11227]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ13971]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ20857]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ00405]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ11999]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ11615]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ13976]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ13977]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[DETOX1-PWY]], superoxide radicals degradation:
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[DETOX1-PWY-1]], reactive oxygen species degradation:
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-6854]], ethylene biosynthesis III (microbes):
 +
** '''2''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[manual]]; source: [[import_from_medium]]; tool: [[curation]]; comment: added to manage seeds from boundary to extracellular compartment
+
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
{{#set: direction=reversible}}
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
{{#set: nb gene associated=0}}
+
* RHEA:
−
{{#set: nb pathway associated=0}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20697 20697]
−
{{#set: reconstruction category=manual}}
+
* LIGAND-RXN:
−
{{#set: reconstruction tool=curation}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R00275 R00275]
−
{{#set: reconstruction comment=added to manage seeds from boundary to extracellular compartment}}
+
* UNIPROT:
−
{{#set: reconstruction source=import_from_medium}}
+
** [http://www.uniprot.org/uniprot/P11419 P11419]
 +
** [http://www.uniprot.org/uniprot/P09670 P09670]
 +
** [http://www.uniprot.org/uniprot/P09213 P09213]
 +
** [http://www.uniprot.org/uniprot/P11428 P11428]
 +
** [http://www.uniprot.org/uniprot/P15453 P15453]
 +
** [http://www.uniprot.org/uniprot/P09737 P09737]
 +
** [http://www.uniprot.org/uniprot/P20379 P20379]
 +
** [http://www.uniprot.org/uniprot/P07509 P07509]
 +
** [http://www.uniprot.org/uniprot/P16026 P16026]
 +
** [http://www.uniprot.org/uniprot/P19666 P19666]
 +
** [http://www.uniprot.org/uniprot/P25841 P25841]
 +
** [http://www.uniprot.org/uniprot/P09738 P09738]
 +
** [http://www.uniprot.org/uniprot/P19665 P19665]
 +
** [http://www.uniprot.org/uniprot/P19685 P19685]
 +
** [http://www.uniprot.org/uniprot/P28755 P28755]
 +
** [http://www.uniprot.org/uniprot/P34107 P34107]
 +
** [http://www.uniprot.org/uniprot/P34697 P34697]
 +
** [http://www.uniprot.org/uniprot/P41979 P41979]
 +
** [http://www.uniprot.org/uniprot/Q08420 Q08420]
 +
** [http://www.uniprot.org/uniprot/Q01137 Q01137]
 +
** [http://www.uniprot.org/uniprot/P53652 P53652]
 +
** [http://www.uniprot.org/uniprot/Q7M4I8 Q7M4I8]
 +
** [http://www.uniprot.org/uniprot/P25842 P25842]
 +
** [http://www.uniprot.org/uniprot/P41980 P41980]
 +
** [http://www.uniprot.org/uniprot/P53641 P53641]
 +
** [http://www.uniprot.org/uniprot/P54375 P54375]
 +
** [http://www.uniprot.org/uniprot/O67149 O67149]
 +
** [http://www.uniprot.org/uniprot/Q9Z9C4 Q9Z9C4]
 +
** [http://www.uniprot.org/uniprot/Q9RU48 Q9RU48]
 +
** [http://www.uniprot.org/uniprot/Q9RUV2 Q9RUV2]
 +
** [http://www.uniprot.org/uniprot/P41978 P41978]
 +
** [http://www.uniprot.org/uniprot/P43725 P43725]
 +
** [http://www.uniprot.org/uniprot/O35023 O35023]
 +
** [http://www.uniprot.org/uniprot/O67470 O67470]
 +
** [http://www.uniprot.org/uniprot/Q9JUW9 Q9JUW9]
 +
** [http://www.uniprot.org/uniprot/P00442 P00442]
 +
** [http://www.uniprot.org/uniprot/P00449 P00449]
 +
** [http://www.uniprot.org/uniprot/P00445 P00445]
 +
** [http://www.uniprot.org/uniprot/P00447 P00447]
 +
** [http://www.uniprot.org/uniprot/P0AGD3 P0AGD3]
 +
** [http://www.uniprot.org/uniprot/P00448 P00448]
 +
** [http://www.uniprot.org/uniprot/P61851 P61851]
 +
** [http://www.uniprot.org/uniprot/P00446 P00446]
 +
** [http://www.uniprot.org/uniprot/P00443 P00443]
 +
** [http://www.uniprot.org/uniprot/P09224 P09224]
 +
** [http://www.uniprot.org/uniprot/P00441 P00441]
 +
** [http://www.uniprot.org/uniprot/P08294 P08294]
 +
** [http://www.uniprot.org/uniprot/P04179 P04179]
 +
** [http://www.uniprot.org/uniprot/P24704 P24704]
 +
** [http://www.uniprot.org/uniprot/P24705 P24705]
 +
** [http://www.uniprot.org/uniprot/P04178 P04178]
 +
** [http://www.uniprot.org/uniprot/P11964 P11964]
 +
** [http://www.uniprot.org/uniprot/P27084 P27084]
 +
** [http://www.uniprot.org/uniprot/P09678 P09678]
 +
** [http://www.uniprot.org/uniprot/P07895 P07895]
 +
** [http://www.uniprot.org/uniprot/P22233 P22233]
 +
** [http://www.uniprot.org/uniprot/P07505 P07505]
 +
** [http://www.uniprot.org/uniprot/P03946 P03946]
 +
** [http://www.uniprot.org/uniprot/Q7M137 Q7M137]
 +
** [http://www.uniprot.org/uniprot/P43312 P43312]
 +
** [http://www.uniprot.org/uniprot/Q9ZKE6 Q9ZKE6]
 +
** [http://www.uniprot.org/uniprot/P57005 P57005]
 +
** [http://www.uniprot.org/uniprot/P18868 P18868]
 +
** [http://www.uniprot.org/uniprot/O66602 O66602]
 +
** [http://www.uniprot.org/uniprot/Q9ZD15 Q9ZD15]
 +
** [http://www.uniprot.org/uniprot/Q9Y8H8 Q9Y8H8]
 +
** [http://www.uniprot.org/uniprot/Q59623 Q59623]
 +
** [http://www.uniprot.org/uniprot/Q9JZV6 Q9JZV6]
 +
** [http://www.uniprot.org/uniprot/O84296 O84296]
 +
** [http://www.uniprot.org/uniprot/P53640 P53640]
 +
** [http://www.uniprot.org/uniprot/P11796 P11796]
 +
** [http://www.uniprot.org/uniprot/Q59081 Q59081]
 +
** [http://www.uniprot.org/uniprot/P24702 P24702]
 +
** [http://www.uniprot.org/uniprot/Q59165 Q59165]
 +
** [http://www.uniprot.org/uniprot/P37369 P37369]
 +
** [http://www.uniprot.org/uniprot/P42821 P42821]
 +
** [http://www.uniprot.org/uniprot/Q59307 Q59307]
 +
** [http://www.uniprot.org/uniprot/Q59315 Q59315]
 +
** [http://www.uniprot.org/uniprot/P41976 P41976]
 +
** [http://www.uniprot.org/uniprot/P09671 P09671]
 +
** [http://www.uniprot.org/uniprot/P07632 P07632]
 +
** [http://www.uniprot.org/uniprot/P28764 P28764]
 +
** [http://www.uniprot.org/uniprot/P80293 P80293]
 +
** [http://www.uniprot.org/uniprot/Q42683 Q42683]
 +
** [http://www.uniprot.org/uniprot/P31161 P31161]
 +
** [http://www.uniprot.org/uniprot/Q59452 Q59452]
 +
** [http://www.uniprot.org/uniprot/P0AGD1 P0AGD1]
 +
** [http://www.uniprot.org/uniprot/Q59094 Q59094]
 +
** [http://www.uniprot.org/uniprot/O30826 O30826]
 +
** [http://www.uniprot.org/uniprot/P34461 P34461]
 +
** [http://www.uniprot.org/uniprot/Q27538 Q27538]
 +
** [http://www.uniprot.org/uniprot/Q9ZWM8 Q9ZWM8]
 +
** [http://www.uniprot.org/uniprot/P08228 P08228]
 +
** [http://www.uniprot.org/uniprot/P27082 P27082]
 +
** [http://www.uniprot.org/uniprot/P31108 P31108]
 +
** [http://www.uniprot.org/uniprot/Q7M1R5 Q7M1R5]
 +
** [http://www.uniprot.org/uniprot/P28759 P28759]
 +
** [http://www.uniprot.org/uniprot/Q8LEP0 Q8LEP0]
 +
** [http://www.uniprot.org/uniprot/Q7M4X8 Q7M4X8]
 +
** [http://www.uniprot.org/uniprot/Q7M0X9 Q7M0X9]
 +
** [http://www.uniprot.org/uniprot/P22799 P22799]
 +
** [http://www.uniprot.org/uniprot/Q7M1U7 Q7M1U7]
 +
** [http://www.uniprot.org/uniprot/Q7M236 Q7M236]
 +
** [http://www.uniprot.org/uniprot/Q7M1U6 Q7M1U6]
 +
** [http://www.uniprot.org/uniprot/Q7M1U5 Q7M1U5]
 +
** [http://www.uniprot.org/uniprot/P09223 P09223]
 +
** [http://www.uniprot.org/uniprot/P10791 P10791]
 +
** [http://www.uniprot.org/uniprot/P10792 P10792]
 +
** [http://www.uniprot.org/uniprot/Q43273 Q43273]
 +
** [http://www.uniprot.org/uniprot/P11418 P11418]
 +
** [http://www.uniprot.org/uniprot/P13926 P13926]
 +
** [http://www.uniprot.org/uniprot/P61852 P61852]
 +
** [http://www.uniprot.org/uniprot/P13367 P13367]
 +
** [http://www.uniprot.org/uniprot/P23345 P23345]
 +
** [http://www.uniprot.org/uniprot/P14830 P14830]
 +
** [http://www.uniprot.org/uniprot/P15107 P15107]
 +
** [http://www.uniprot.org/uniprot/P23417 P23417]
 +
** [http://www.uniprot.org/uniprot/P17670 P17670]
 +
** [http://www.uniprot.org/uniprot/P24706 P24706]
 +
** [http://www.uniprot.org/uniprot/P28763 P28763]
 +
** [http://www.uniprot.org/uniprot/P24669 P24669]
 +
** [http://www.uniprot.org/uniprot/P24707 P24707]
 +
** [http://www.uniprot.org/uniprot/P28757 P28757]
 +
** [http://www.uniprot.org/uniprot/P28760 P28760]
 +
** [http://www.uniprot.org/uniprot/P28756 P28756]
 +
** [http://www.uniprot.org/uniprot/P28766 P28766]
 +
** [http://www.uniprot.org/uniprot/P28762 P28762]
 +
** [http://www.uniprot.org/uniprot/Q00637 Q00637]
 +
** [http://www.uniprot.org/uniprot/P28761 P28761]
 +
** [http://www.uniprot.org/uniprot/P28765 P28765]
 +
** [http://www.uniprot.org/uniprot/P28767 P28767]
 +
** [http://www.uniprot.org/uniprot/P28768 P28768]
 +
** [http://www.uniprot.org/uniprot/P28758 P28758]
 +
** [http://www.uniprot.org/uniprot/Q7M240 Q7M240]
 +
** [http://www.uniprot.org/uniprot/Q7M239 Q7M239]
 +
** [http://www.uniprot.org/uniprot/Q7M237 Q7M237]
 +
** [http://www.uniprot.org/uniprot/Q7M238 Q7M238]
 +
** [http://www.uniprot.org/uniprot/P80174 P80174]
 +
** [http://www.uniprot.org/uniprot/P09212 P09212]
 +
** [http://www.uniprot.org/uniprot/Q08713 Q08713]
 +
** [http://www.uniprot.org/uniprot/P33431 P33431]
 +
** [http://www.uniprot.org/uniprot/P35017 P35017]
 +
** [http://www.uniprot.org/uniprot/Q07796 Q07796]
 +
** [http://www.uniprot.org/uniprot/P53639 P53639]
 +
** [http://www.uniprot.org/uniprot/P14831 P14831]
 +
** [http://www.uniprot.org/uniprot/Q07182 Q07182]
 +
** [http://www.uniprot.org/uniprot/P41981 P41981]
 +
** [http://www.uniprot.org/uniprot/Q9R4U1 Q9R4U1]
 +
** [http://www.uniprot.org/uniprot/Q60036 Q60036]
 +
** [http://www.uniprot.org/uniprot/P53643 P53643]
 +
** [http://www.uniprot.org/uniprot/P53644 P53644]
 +
** [http://www.uniprot.org/uniprot/P53645 P53645]
 +
** [http://www.uniprot.org/uniprot/P53646 P53646]
 +
** [http://www.uniprot.org/uniprot/P53649 P53649]
 +
** [http://www.uniprot.org/uniprot/P53647 P53647]
 +
** [http://www.uniprot.org/uniprot/P46728 P46728]
 +
** [http://www.uniprot.org/uniprot/P53650 P53650]
 +
** [http://www.uniprot.org/uniprot/P53648 P53648]
 +
** [http://www.uniprot.org/uniprot/P41977 P41977]
 +
** [http://www.uniprot.org/uniprot/Q64466 Q64466]
 +
** [http://www.uniprot.org/uniprot/Q7M235 Q7M235]
 +
** [http://www.uniprot.org/uniprot/Q59433 Q59433]
 +
** [http://www.uniprot.org/uniprot/P0A4J5 P0A4J5]
 +
** [http://www.uniprot.org/uniprot/Q59806 Q59806]
 +
** [http://www.uniprot.org/uniprot/P0A4J6 P0A4J6]
 +
** [http://www.uniprot.org/uniprot/Q59434 Q59434]
 +
** [http://www.uniprot.org/uniprot/Q43779 Q43779]
 +
** [http://www.uniprot.org/uniprot/Q27740 Q27740]
 +
** [http://www.uniprot.org/uniprot/Q27460 Q27460]
 +
** [http://www.uniprot.org/uniprot/Q59519 Q59519]
 +
** [http://www.uniprot.org/uniprot/P80566 P80566]
 +
** [http://www.uniprot.org/uniprot/P93801 P93801]
 +
** [http://www.uniprot.org/uniprot/P77968 P77968]
 +
** [http://www.uniprot.org/uniprot/P93407 P93407]
 +
** [http://www.uniprot.org/uniprot/Q43008 Q43008]
 +
** [http://www.uniprot.org/uniprot/Q43803 Q43803]
 +
** [http://www.uniprot.org/uniprot/Q43121 Q43121]
 +
** [http://www.uniprot.org/uniprot/P21276 P21276]
 +
** [http://www.uniprot.org/uniprot/Q96123 Q96123]
 +
** [http://www.uniprot.org/uniprot/Q96185 Q96185]
 +
** [http://www.uniprot.org/uniprot/Q02610 Q02610]
 +
** [http://www.uniprot.org/uniprot/O24400 O24400]
 +
** [http://www.uniprot.org/uniprot/P93606 P93606]
 +
** [http://www.uniprot.org/uniprot/O22373 O22373]
 +
** [http://www.uniprot.org/uniprot/O49066 O49066]
 +
** [http://www.uniprot.org/uniprot/Q42684 Q42684]
 +
** [http://www.uniprot.org/uniprot/O65324 O65324]
 +
** [http://www.uniprot.org/uniprot/O65768 O65768]
 +
** [http://www.uniprot.org/uniprot/Q42672 Q42672]
 +
** [http://www.uniprot.org/uniprot/O81233 O81233]
 +
** [http://www.uniprot.org/uniprot/O23785 O23785]
 +
** [http://www.uniprot.org/uniprot/Q42862 Q42862]
 +
** [http://www.uniprot.org/uniprot/O49044 O49044]
 +
** [http://www.uniprot.org/uniprot/Q90023 Q90023]
 +
** [http://www.uniprot.org/uniprot/Q9YMI3 Q9YMI3]
 +
** [http://www.uniprot.org/uniprot/O92400 O92400]
 +
** [http://www.uniprot.org/uniprot/O51917 O51917]
 +
** [http://www.uniprot.org/uniprot/P61502 P61502]
 +
** [http://www.uniprot.org/uniprot/O08459 O08459]
 +
** [http://www.uniprot.org/uniprot/O08461 O08461]
 +
** [http://www.uniprot.org/uniprot/P53653 P53653]
 +
** [http://www.uniprot.org/uniprot/Q9LYK8 Q9LYK8]
 +
** [http://www.uniprot.org/uniprot/Q03302 Q03302]
 +
** [http://www.uniprot.org/uniprot/Q03300 Q03300]
 +
** [http://www.uniprot.org/uniprot/Q03301 Q03301]
 +
** [http://www.uniprot.org/uniprot/Q9UQX0 Q9UQX0]
 +
** [http://www.uniprot.org/uniprot/O81235 O81235]
 +
** [http://www.uniprot.org/uniprot/Q9SM64 Q9SM64]
 +
** [http://www.uniprot.org/uniprot/Q9STB5 Q9STB5]
 +
** [http://www.uniprot.org/uniprot/Q9M532 Q9M532]
 +
** [http://www.uniprot.org/uniprot/O82584 O82584]
 +
** [http://www.uniprot.org/uniprot/O82519 O82519]
 +
** [http://www.uniprot.org/uniprot/O78310 O78310]
 +
** [http://www.uniprot.org/uniprot/O81236 O81236]
 +
** [http://www.uniprot.org/uniprot/O81240 O81240]
 +
</div>
 +
{{#set: direction=left-to-right}}
 +
{{#set: common-name=superoxide dismutase}}
 +
{{#set: ec-number=ec-1.15.1.1}}
 +
{{#set: nb gene associated=8}}
 +
{{#set: nb pathway associated=3}}
 +
{{#set: reconstruction category=annotation|orthology}}
 +
{{#set: reconstruction tool=pathwaytools|pantograph}}
 +
{{#set: reconstruction comment=n.a}}
 +
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 11:21, 15 January 2021

Reaction SUPEROX-DISMUT-RXN

  • direction:
    • left-to-right
  • common-name:
    • superoxide dismutase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • DETOX1-PWY, superoxide radicals degradation:
    • 2 reactions found over 2 reactions in the full pathway
  • DETOX1-PWY-1, reactive oxygen species degradation:
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-6854, ethylene biosynthesis III (microbes):
    • 2 reactions found over 7 reactions in the full pathway

Reconstruction information

External links





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