Difference between revisions of "RXN-7984"
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(Created page with "Category:reaction == Reaction TRANS-RXN-261 == * direction: ** left-to-right == Reaction formula == * 1 4-AMINO-BUTYRATE[c] '''+''' 1 GLT[e] '''=>''' 1 4-AMINO-B...") |
(Created page with "Category:reaction == Reaction RXN-7984 == * direction: ** left-to-right * common-name: ** violaxanthin de-epoxidase * synonymous: ** vde == Reaction formula == * 1 ASCOR...") |
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| Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
| − | == Reaction | + | == Reaction RXN-7984 == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
| + | * common-name: | ||
| + | ** violaxanthin de-epoxidase | ||
| + | * synonymous: | ||
| + | ** vde | ||
== Reaction formula == | == Reaction formula == | ||
| − | * 1 [[ | + | * 1 [[ASCORBATE]][c] '''+''' 1 [[CPD1F-133]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CPD1F-131]][c] '''+''' 1 [[L-DEHYDRO-ASCORBATE]][c] '''+''' 1 [[WATER]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
| − | * Gene: [[ | + | * Gene: [[SJ19927]] |
| + | ** Category: [[annotation]] | ||
| + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
| − | *** Source: [[ | + | * Gene: [[SJ03764]] |
| + | ** Category: [[annotation]] | ||
| + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
| + | * Gene: [[SJ20456]] | ||
| + | ** Category: [[annotation]] | ||
| + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
| + | * [[PWY-5945]], violaxanthin, antheraxanthin and zeaxanthin interconversion: | ||
| + | ** '''4''' reactions found over '''4''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
| + | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
== External links == | == External links == | ||
| + | * METANETX-RXN : MNXR138919 | ||
| + | * RHEA: | ||
| + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15354 15354] | ||
| + | * LIGAND-RXN: | ||
| + | ** [http://www.genome.jp/dbget-bin/www_bget?R07178 R07178] | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
| − | {{#set: nb gene associated= | + | {{#set: common-name=violaxanthin de-epoxidase}} |
| − | {{#set: nb pathway associated= | + | {{#set: synonymous=vde}} |
| − | {{#set: reconstruction category=orthology}} | + | {{#set: nb gene associated=3}} |
| − | {{#set: reconstruction tool=pantograph}} | + | {{#set: nb pathway associated=1}} |
| + | {{#set: reconstruction category=orthology|annotation}} | ||
| + | {{#set: reconstruction tool=pathwaytools|pantograph}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
| − | {{#set: reconstruction source=output_pantograph_nannochloropsis_salina}} | + | {{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome}} |
Latest revision as of 11:19, 18 March 2021
Contents
Reaction RXN-7984
- direction:
- left-to-right
- common-name:
- violaxanthin de-epoxidase
- synonymous:
- vde
Reaction formula
- 1 ASCORBATE[c] + 1 CPD1F-133[c] + 1 PROTON[c] => 1 CPD1F-131[c] + 1 L-DEHYDRO-ASCORBATE[c] + 1 WATER[c]
Gene(s) associated with this reaction
- Gene: SJ19927
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ03764
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ20456
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-5945, violaxanthin, antheraxanthin and zeaxanthin interconversion:
- 4 reactions found over 4 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
External links
