Difference between revisions of "RXN-7984"

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(Created page with "Category:reaction == Reaction PYRUVATEORTHOPHOSPHATE-DIKINASE-RXN == * direction: ** reversible * common-name: ** pyruvate phosphate dikinase * ec-number: ** [http://enzym...")
(Created page with "Category:reaction == Reaction RXN-7984 == * direction: ** left-to-right * common-name: ** violaxanthin de-epoxidase * synonymous: ** vde == Reaction formula == * 1 ASCOR...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction PYRUVATEORTHOPHOSPHATE-DIKINASE-RXN ==
+
== Reaction RXN-7984 ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** pyruvate phosphate dikinase
+
** violaxanthin de-epoxidase
−
* ec-number:
+
* synonymous:
−
** [http://enzyme.expasy.org/EC/2.7.9.1 ec-2.7.9.1]
+
** vde
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[PYRUVATE]][c] '''+''' 1 [[Pi]][c] '''<=>''' 1 [[AMP]][c] '''+''' 1 [[PHOSPHO-ENOL-PYRUVATE]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[ASCORBATE]][c] '''+''' 1 [[CPD1F-133]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CPD1F-131]][c] '''+''' 1 [[L-DEHYDRO-ASCORBATE]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ06759]]
+
* Gene: [[SJ19927]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
* Gene: [[SJ03764]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ20456]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-241]], C4 photosynthetic carbon assimilation cycle, NADP-ME type:
+
* [[PWY-5945]], violaxanthin, antheraxanthin and zeaxanthin interconversion:
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
** '''4''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-6549]], L-glutamine biosynthesis III:
 
−
** '''8''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-7117]], C4 photosynthetic carbon assimilation cycle, PEPCK type:
 
−
** '''10''' reactions found over '''12''' reactions in the full pathway
 
−
* [[PWY-7115]], C4 photosynthetic carbon assimilation cycle, NAD-ME type:
 
−
** '''9''' reactions found over '''10''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR138919
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10756 10756]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15354 15354]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00206 R00206]
+
** [http://www.genome.jp/dbget-bin/www_bget?R07178 R07178]
−
* UNIPROT:
+
{{#set: direction=left-to-right}}
−
** [http://www.uniprot.org/uniprot/Q7M0I6 Q7M0I6]
+
{{#set: common-name=violaxanthin de-epoxidase}}
−
** [http://www.uniprot.org/uniprot/O23404 O23404]
+
{{#set: synonymous=vde}}
−
** [http://www.uniprot.org/uniprot/Q9WYA9 Q9WYA9]
+
{{#set: nb gene associated=3}}
−
** [http://www.uniprot.org/uniprot/P22983 P22983]
+
{{#set: nb pathway associated=1}}
−
** [http://www.uniprot.org/uniprot/Q41846 Q41846]
+
{{#set: reconstruction category=orthology|annotation}}
−
** [http://www.uniprot.org/uniprot/Q42367 Q42367]
 
−
** [http://www.uniprot.org/uniprot/Q42368 Q42368]
 
−
** [http://www.uniprot.org/uniprot/P22221 P22221]
 
−
** [http://www.uniprot.org/uniprot/P37213 P37213]
 
−
** [http://www.uniprot.org/uniprot/Q42736 Q42736]
 
−
** [http://www.uniprot.org/uniprot/Q42910 Q42910]
 
−
** [http://www.uniprot.org/uniprot/Q39734 Q39734]
 
−
** [http://www.uniprot.org/uniprot/Q39735 Q39735]
 
−
** [http://www.uniprot.org/uniprot/O24612 O24612]
 
−
** [http://www.uniprot.org/uniprot/O85840 O85840]
 
−
</div>
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=pyruvate phosphate dikinase}}
 
−
{{#set: ec-number=ec-2.7.9.1}}
 
−
{{#set: nb gene associated=1}}
 
−
{{#set: nb pathway associated=4}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome}}

Latest revision as of 11:19, 18 March 2021

Reaction RXN-7984

  • direction:
    • left-to-right
  • common-name:
    • violaxanthin de-epoxidase
  • synonymous:
    • vde

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5945, violaxanthin, antheraxanthin and zeaxanthin interconversion:
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR138919
  • RHEA:
  • LIGAND-RXN:





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