Difference between revisions of "RXN-8026"

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(Created page with "Category:reaction == Reaction 3-HYDROXYBUTYRATE-DEHYDROGENASE-RXN == * direction: ** reversible * common-name: ** 3-hydroxybutyrate dehydrogenase * ec-number: ** [http://e...")
(Created page with "Category:reaction == Reaction RXN-8026 == * direction: ** left-to-right * synonymous: ** crtz == Reaction formula == * 1 CPD-7409[c] '''+''' 1 OXYGEN-MOLECULE[c] '...")
 
(6 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 3-HYDROXYBUTYRATE-DEHYDROGENASE-RXN ==
+
== Reaction RXN-8026 ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
−
* common-name:
+
* synonymous:
−
** 3-hydroxybutyrate dehydrogenase
+
** crtz
−
* ec-number:
 
−
** [http://enzyme.expasy.org/EC/1.1.1.30 ec-1.1.1.30]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-335]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[3-KETOBUTYRATE]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[CPD-7409]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 2 [[PROTON]][c] '''+''' 2 [[Reduced-ferredoxins]][c] '''=>''' 1 [[CPD1F-130]][c] '''+''' 2 [[Oxidized-ferredoxins]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* Gene: [[SJ07227]]
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* Gene: [[SJ20292]]
+
** Category: [[manual]]
−
** Category: [[annotation]]
+
*** Source: [[sjap]], Tool: [[unknown-tool]], Assignment: n.a, Comment: transformation of diatoxanthin into diadinoxanthin (second cycle of xanthophylls)
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
* Gene: [[SJ07228]]
−
** Category: [[orthology]]
+
** Category: [[manual]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[sjap]], Tool: [[unknown-tool]], Assignment: n.a, Comment: transformation of diatoxanthin into diadinoxanthin (second cycle of xanthophylls)
−
* Gene: [[SJ20291]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ05277]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ21312]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ05276]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ10028]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ05275]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ05274]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ21322]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ06127]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY66-368]], ketolysis:
+
* [[PWY-7638]], echinenone and zeaxanthin biosynthesis (Synechocystis):
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
** '''2''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY66-367]], ketogenesis:
+
* [[PWY-5944]], zeaxanthin biosynthesis:
−
** '''4''' reactions found over '''5''' reactions in the full pathway
+
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-5288]], astaxanthin biosynthesis (bacteria, fungi, algae):
 +
** '''2''' reactions found over '''10''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
* category: [[manual]]; source: [[sjap]]; tool: [[curation]]; comment: transformation of beta carotene into zeaxanthin (with beta cryptoxanthin as an intermediate)
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR111180
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R07559 R07559]
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20524 20524]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30330 30330]
−
* LIGAND-RXN:
+
{{#set: direction=left-to-right}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01361 R01361]
+
{{#set: synonymous=crtz}}
−
* UNIPROT:
+
{{#set: nb gene associated=2}}
−
** [http://www.uniprot.org/uniprot/P29147 P29147]
+
{{#set: nb pathway associated=3}}
−
** [http://www.uniprot.org/uniprot/Q02338 Q02338]
+
{{#set: reconstruction category=manual}}
−
** [http://www.uniprot.org/uniprot/Q02337 Q02337]
+
{{#set: reconstruction tool=curation}}
−
{{#set: direction=reversible}}
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{{#set: reconstruction comment=transformation of beta carotene into zeaxanthin (with beta cryptoxanthin as an intermediate)}}
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{{#set: common-name=3-hydroxybutyrate dehydrogenase}}
+
{{#set: reconstruction source=sjap}}
−
{{#set: ec-number=ec-1.1.1.30}}
 
−
{{#set: nb gene associated=10}}
 
−
{{#set: nb pathway associated=2}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
−
{{#set: reconstruction comment=n.a}}
 
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_nannochloropsis_salina}}
 

Latest revision as of 11:22, 18 March 2021

Reaction RXN-8026

  • direction:
    • left-to-right
  • synonymous:
    • crtz

Reaction formula

Gene(s) associated with this reaction

  • Gene: SJ07227
    • Category: manual
      • Source: sjap, Tool: unknown-tool, Assignment: n.a, Comment: transformation of diatoxanthin into diadinoxanthin (second cycle of xanthophylls)
  • Gene: SJ07228
    • Category: manual
      • Source: sjap, Tool: unknown-tool, Assignment: n.a, Comment: transformation of diatoxanthin into diadinoxanthin (second cycle of xanthophylls)

Pathway(s)

  • PWY-7638, echinenone and zeaxanthin biosynthesis (Synechocystis):
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-5944, zeaxanthin biosynthesis:
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-5288, astaxanthin biosynthesis (bacteria, fungi, algae):
    • 2 reactions found over 10 reactions in the full pathway

Reconstruction information

  • category: manual; source: sjap; tool: curation; comment: transformation of beta carotene into zeaxanthin (with beta cryptoxanthin as an intermediate)

External links

  • METANETX-RXN : MNXR111180
  • LIGAND-RXN:
  • RHEA:





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