Difference between revisions of "RXN-8032"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-ISOPROPYLMALISOM-RXN 3-ISOPROPYLMALISOM-RXN] == * direction: ** reversible * common-name: ** 3-is...")
 
(Created page with "Category:reaction == Reaction RXN-8032 == * direction: ** reversible * common-name: ** 3-ketopimelyl-coa thiolase * ec-number: ** [http://enzyme.expasy.org/EC/2.3.1 ec-2.3...")
 
(9 intermediate revisions by 5 users not shown)
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-ISOPROPYLMALISOM-RXN 3-ISOPROPYLMALISOM-RXN] ==
+
== Reaction RXN-8032 ==
 
* direction:
 
* direction:
 
** reversible
 
** reversible
 
* common-name:
 
* common-name:
−
** 3-isopropylmalate dehydratase
+
** 3-ketopimelyl-coa thiolase
−
** (2s)-2-isopropylmalate hydro-lyase (2-isopropylmaleate-forming)
+
* ec-number:
−
* synonymous:
+
** [http://enzyme.expasy.org/EC/2.3.1 ec-2.3.1]
−
** (2r,3s)-3-isopropylmalate hydro-lyase
 
−
** β-isopropylmalate dehydratase
 
−
** 3-isopropylmalate hydro-lyase
 
−
** α-isopropylmalate isomerase
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-9451]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[3-CARBOXY-3-HYDROXY-ISOCAPROATE]][c]
+
* 1 [[3-OXOPIMELOYL-COA]][c] '''+''' 1 [[CO-A]][c] '''<=>''' 1 [[ACETYL-COA]][c] '''+''' 1 [[GLUTARYL-COA]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ22396]]
+
* Gene: [[SJ15041]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ09771]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[LEUSYN-PWY]], L-leucine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=LEUSYN-PWY LEUSYN-PWY]
+
* [[P321-PWY]], benzoyl-CoA degradation III (anaerobic):
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
** '''1''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-6871]], 3-methylbutanol biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6871 PWY-6871]
+
* [[PWY-7401]], crotonate fermentation (to acetate and cyclohexane carboxylate):
−
** '''5''' reactions found over '''7''' reactions in the full pathway
+
** '''6''' reactions found over '''15''' reactions in the full pathway
 +
* [[CENTBENZCOA-PWY]], benzoyl-CoA degradation II (anaerobic):
 +
** '''1''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR102157
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16296 16296]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03968 R03968]
+
** [http://www.genome.jp/dbget-bin/www_bget?R05586 R05586]
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/Q9PLW1 Q9PLW1]
 
−
** [http://www.uniprot.org/uniprot/Q9JU82 Q9JU82]
 
−
** [http://www.uniprot.org/uniprot/P80858 P80858]
 
−
** [http://www.uniprot.org/uniprot/Q9UZ07 Q9UZ07]
 
−
** [http://www.uniprot.org/uniprot/Q9JU81 Q9JU81]
 
−
** [http://www.uniprot.org/uniprot/Q58673 Q58673]
 
−
** [http://www.uniprot.org/uniprot/Q02144 Q02144]
 
−
** [http://www.uniprot.org/uniprot/P44968 P44968]
 
−
** [http://www.uniprot.org/uniprot/Q58667 Q58667]
 
−
** [http://www.uniprot.org/uniprot/P44438 P44438]
 
−
** [http://www.uniprot.org/uniprot/P0A6A6 P0A6A6]
 
−
** [http://www.uniprot.org/uniprot/Q9PLW2 Q9PLW2]
 
−
** [http://www.uniprot.org/uniprot/Q44022 Q44022]
 
−
** [http://www.uniprot.org/uniprot/Q44023 Q44023]
 
−
** [http://www.uniprot.org/uniprot/Q44427 Q44427]
 
−
** [http://www.uniprot.org/uniprot/P17279 P17279]
 
−
** [http://www.uniprot.org/uniprot/P04787 P04787]
 
−
** [http://www.uniprot.org/uniprot/P15717 P15717]
 
−
** [http://www.uniprot.org/uniprot/P18250 P18250]
 
−
** [http://www.uniprot.org/uniprot/Q02142 Q02142]
 
−
** [http://www.uniprot.org/uniprot/P30126 P30126]
 
−
** [http://www.uniprot.org/uniprot/P50181 P50181]
 
−
** [http://www.uniprot.org/uniprot/P07264 P07264]
 
−
** [http://www.uniprot.org/uniprot/P74207 P74207]
 
−
** [http://www.uniprot.org/uniprot/O86534 O86534]
 
−
** [http://www.uniprot.org/uniprot/O86535 O86535]
 
−
</div>
 
 
{{#set: direction=reversible}}
 
{{#set: direction=reversible}}
−
{{#set: common-name=(2s)-2-isopropylmalate hydro-lyase (2-isopropylmaleate-forming)|3-isopropylmalate dehydratase}}
+
{{#set: common-name=3-ketopimelyl-coa thiolase}}
−
{{#set: synonymous=&beta;-isopropylmalate dehydratase|&alpha;-isopropylmalate isomerase|3-isopropylmalate hydro-lyase|(2r,3s)-3-isopropylmalate hydro-lyase}}
+
{{#set: ec-number=ec-2.3.1}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=2}}
+
{{#set: nb pathway associated=3}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana}}

Latest revision as of 11:18, 18 March 2021

Reaction RXN-8032

  • direction:
    • reversible
  • common-name:
    • 3-ketopimelyl-coa thiolase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • P321-PWY, benzoyl-CoA degradation III (anaerobic):
    • 1 reactions found over 9 reactions in the full pathway
  • PWY-7401, crotonate fermentation (to acetate and cyclohexane carboxylate):
    • 6 reactions found over 15 reactions in the full pathway
  • CENTBENZCOA-PWY, benzoyl-CoA degradation II (anaerobic):
    • 1 reactions found over 7 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR102157
  • LIGAND-RXN:





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-8032&oldid=139894"