Difference between revisions of "RXN-8036"

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(Created page with "Category:reaction == Reaction CHORISMATE-SYNTHASE-RXN == * direction: ** left-to-right * common-name: ** chorismate synthase * ec-number: ** [http://enzyme.expasy.org/EC/4...")
(Created page with "Category:reaction == Reaction RXN-7697 == * direction: ** left-to-right * common-name: ** very-long-chain 3-ketoacyl-coa synthase * ec-number: ** [http://enzyme.expasy.org...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction CHORISMATE-SYNTHASE-RXN ==
+
== Reaction RXN-7697 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** chorismate synthase
+
** very-long-chain 3-ketoacyl-coa synthase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.2.3.5 ec-4.2.3.5]
+
** [http://enzyme.expasy.org/EC/2.3.1.199 ec-2.3.1.199]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[3-ENOLPYRUVYL-SHIKIMATE-5P]][c] '''=>''' 1 [[CHORISMATE]][c] '''+''' 1 [[Pi]][c]
+
* 1 [[MALONYL-COA]][c] '''+''' 1 [[Very-long-Chain-234-Saturated-acyl-CoAs]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[Very-Long-Chain-oxoacyl-CoAs]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ00821]]
+
* Gene: [[SJ11672]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ00613]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ06616]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ19629]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6163]], chorismate biosynthesis from 3-dehydroquinate:
+
* [[PWY-5080]], very long chain fatty acid biosynthesis I:
−
** '''6''' reactions found over '''5''' reactions in the full pathway
+
** '''3''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21021 21021]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=32728 32728]
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R01714 R01714]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P27793 P27793]
 
−
** [http://www.uniprot.org/uniprot/P23353 P23353]
 
−
** [http://www.uniprot.org/uniprot/Q9JT81 Q9JT81]
 
−
** [http://www.uniprot.org/uniprot/Q58575 Q58575]
 
−
** [http://www.uniprot.org/uniprot/P43875 P43875]
 
−
** [http://www.uniprot.org/uniprot/Q9PM41 Q9PM41]
 
−
** [http://www.uniprot.org/uniprot/Q9CET2 Q9CET2]
 
−
** [http://www.uniprot.org/uniprot/P28777 P28777]
 
−
** [http://www.uniprot.org/uniprot/Q42885 Q42885]
 
−
** [http://www.uniprot.org/uniprot/Q42884 Q42884]
 
−
** [http://www.uniprot.org/uniprot/P16280 P16280]
 
−
** [http://www.uniprot.org/uniprot/P12008 P12008]
 
−
** [http://www.uniprot.org/uniprot/O74413 O74413]
 
−
** [http://www.uniprot.org/uniprot/Q12640 Q12640]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=chorismate synthase}}
+
{{#set: common-name=very-long-chain 3-ketoacyl-coa synthase}}
−
{{#set: ec-number=ec-4.2.3.5}}
+
{{#set: ec-number=ec-2.3.1.199}}
−
{{#set: nb gene associated=1}}
+
{{#set: nb gene associated=4}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 13:18, 14 January 2021

Reaction RXN-7697

  • direction:
    • left-to-right
  • common-name:
    • very-long-chain 3-ketoacyl-coa synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5080, very long chain fatty acid biosynthesis I:
    • 3 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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