Difference between revisions of "RXN-8319"

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(Created page with "Category:reaction == Reaction NADPH-DEHYDROGENASE-RXN == * direction: ** reversible * common-name: ** nadph dehydrogenase * ec-number: ** [http://enzyme.expasy.org/EC/1.6....")
(Created page with "Category:reaction == Reaction OROTPDECARB-RXN == * direction: ** left-to-right * common-name: ** orotidine-5'-phosphate decarboxylase * ec-number: ** [http://enzyme.expasy...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction NADPH-DEHYDROGENASE-RXN ==
+
== Reaction OROTPDECARB-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** nadph dehydrogenase
+
** orotidine-5'-phosphate decarboxylase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.6.99.1 ec-1.6.99.1]
+
** [http://enzyme.expasy.org/EC/4.1.1.23 ec-4.1.1.23]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[Acceptor]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''<=>''' 1 [[Donor-H2]][c] '''+''' 1 [[NADP]][c]
+
* 1 [[OROTIDINE-5-PHOSPHATE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[UMP]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ22257]]
+
* Gene: [[SJ02816]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ02815]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-5686]], UMP biosynthesis I:
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-7790]], UMP biosynthesis II:
 +
** '''5''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7791]], UMP biosynthesis III:
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR102190
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13152 13152]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11597 11597]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00282 R00282]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00965 R00965]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P43084 P43084]
+
** [http://www.uniprot.org/uniprot/P11172 P11172]
−
** [http://www.uniprot.org/uniprot/Q02899 Q02899]
+
** [http://www.uniprot.org/uniprot/Q9KQT7 Q9KQT7]
−
** [http://www.uniprot.org/uniprot/Q03558 Q03558]
+
** [http://www.uniprot.org/uniprot/Q9CFW9 Q9CFW9]
−
** [http://www.uniprot.org/uniprot/P41816 P41816]
+
** [http://www.uniprot.org/uniprot/P24220 P24220]
−
** [http://www.uniprot.org/uniprot/Q42850 Q42850]
+
** [http://www.uniprot.org/uniprot/P0A5M7 P0A5M7]
−
** [http://www.uniprot.org/uniprot/P40952 P40952]
+
** [http://www.uniprot.org/uniprot/P43812 P43812]
−
{{#set: direction=reversible}}
+
** [http://www.uniprot.org/uniprot/Q9PIC1 Q9PIC1]
−
{{#set: common-name=nadph dehydrogenase}}
+
** [http://www.uniprot.org/uniprot/P10652 P10652]
−
{{#set: ec-number=ec-1.6.99.1}}
+
** [http://www.uniprot.org/uniprot/P07817 P07817]
−
{{#set: nb gene associated=1}}
+
** [http://www.uniprot.org/uniprot/P03962 P03962]
−
{{#set: nb pathway associated=0}}
+
** [http://www.uniprot.org/uniprot/P14017 P14017]
−
{{#set: reconstruction category=annotation}}
+
** [http://www.uniprot.org/uniprot/P07691 P07691]
−
{{#set: reconstruction tool=pathwaytools}}
+
** [http://www.uniprot.org/uniprot/P08244 P08244]
 +
** [http://www.uniprot.org/uniprot/P13439 P13439]
 +
** [http://www.uniprot.org/uniprot/P05035 P05035]
 +
** [http://www.uniprot.org/uniprot/P09463 P09463]
 +
** [http://www.uniprot.org/uniprot/P14964 P14964]
 +
** [http://www.uniprot.org/uniprot/P21593 P21593]
 +
** [http://www.uniprot.org/uniprot/P15188 P15188]
 +
** [http://www.uniprot.org/uniprot/P07922 P07922]
 +
** [http://www.uniprot.org/uniprot/P0A5M6 P0A5M6]
 +
** [http://www.uniprot.org/uniprot/Q9JV18 Q9JV18]
 +
** [http://www.uniprot.org/uniprot/P25971 P25971]
 +
** [http://www.uniprot.org/uniprot/P46535 P46535]
 +
** [http://www.uniprot.org/uniprot/P31754 P31754]
 +
** [http://www.uniprot.org/uniprot/P32430 P32430]
 +
** [http://www.uniprot.org/uniprot/Q01637 Q01637]
 +
** [http://www.uniprot.org/uniprot/P09556 P09556]
 +
** [http://www.uniprot.org/uniprot/P21594 P21594]
 +
** [http://www.uniprot.org/uniprot/Q06375 Q06375]
 +
** [http://www.uniprot.org/uniprot/P41769 P41769]
 +
** [http://www.uniprot.org/uniprot/Q18516 Q18516]
 +
** [http://www.uniprot.org/uniprot/Q59654 Q59654]
 +
** [http://www.uniprot.org/uniprot/Q42586 Q42586]
 +
** [http://www.uniprot.org/uniprot/P48844 P48844]
 +
** [http://www.uniprot.org/uniprot/P43230 P43230]
 +
** [http://www.uniprot.org/uniprot/Q42942 Q42942]
 +
** [http://www.uniprot.org/uniprot/O74110 O74110]
 +
</div>
 +
{{#set: direction=left-to-right}}
 +
{{#set: common-name=orotidine-5'-phosphate decarboxylase}}
 +
{{#set: ec-number=ec-4.1.1.23}}
 +
{{#set: nb gene associated=2}}
 +
{{#set: nb pathway associated=3}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Revision as of 08:37, 15 March 2021

Reaction OROTPDECARB-RXN

  • direction:
    • left-to-right
  • common-name:
    • orotidine-5'-phosphate decarboxylase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5686, UMP biosynthesis I:
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-7790, UMP biosynthesis II:
    • 5 reactions found over 7 reactions in the full pathway
  • PWY-7791, UMP biosynthesis III:
    • 5 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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