Difference between revisions of "RXN-8319"
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(Created page with "Category:reaction == Reaction NADPH-DEHYDROGENASE-RXN == * direction: ** reversible * common-name: ** nadph dehydrogenase * ec-number: ** [http://enzyme.expasy.org/EC/1.6....") |
(Created page with "Category:reaction == Reaction OROTPDECARB-RXN == * direction: ** left-to-right * common-name: ** orotidine-5'-phosphate decarboxylase * ec-number: ** [http://enzyme.expasy...") |
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Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction | + | == Reaction OROTPDECARB-RXN == |
* direction: | * direction: | ||
− | ** | + | ** left-to-right |
* common-name: | * common-name: | ||
− | ** | + | ** orotidine-5'-phosphate decarboxylase |
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/1. | + | ** [http://enzyme.expasy.org/EC/4.1.1.23 ec-4.1.1.23] |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[OROTIDINE-5-PHOSPHATE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[UMP]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ02816]] |
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ02815]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
− | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a |
== Pathway(s) == | == Pathway(s) == | ||
+ | * [[PWY-5686]], UMP biosynthesis I: | ||
+ | ** '''6''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-7790]], UMP biosynthesis II: | ||
+ | ** '''5''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[PWY-7791]], UMP biosynthesis III: | ||
+ | ** '''5''' reactions found over '''6''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
+ | * METANETX-RXN : MNXR102190 | ||
* RHEA: | * RHEA: | ||
− | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11597 11597] |
* LIGAND-RXN: | * LIGAND-RXN: | ||
− | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R00965 R00965] |
* UNIPROT: | * UNIPROT: | ||
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P11172 P11172] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/Q9KQT7 Q9KQT7] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/Q9CFW9 Q9CFW9] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P24220 P24220] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P0A5M7 P0A5M7] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P43812 P43812] |
− | {{#set: direction= | + | ** [http://www.uniprot.org/uniprot/Q9PIC1 Q9PIC1] |
− | {{#set: common-name= | + | ** [http://www.uniprot.org/uniprot/P10652 P10652] |
− | {{#set: ec-number=ec-1. | + | ** [http://www.uniprot.org/uniprot/P07817 P07817] |
− | {{#set: nb gene associated= | + | ** [http://www.uniprot.org/uniprot/P03962 P03962] |
− | {{#set: nb pathway associated= | + | ** [http://www.uniprot.org/uniprot/P14017 P14017] |
− | {{#set: reconstruction category=annotation}} | + | ** [http://www.uniprot.org/uniprot/P07691 P07691] |
− | {{#set: reconstruction tool=pathwaytools}} | + | ** [http://www.uniprot.org/uniprot/P08244 P08244] |
+ | ** [http://www.uniprot.org/uniprot/P13439 P13439] | ||
+ | ** [http://www.uniprot.org/uniprot/P05035 P05035] | ||
+ | ** [http://www.uniprot.org/uniprot/P09463 P09463] | ||
+ | ** [http://www.uniprot.org/uniprot/P14964 P14964] | ||
+ | ** [http://www.uniprot.org/uniprot/P21593 P21593] | ||
+ | ** [http://www.uniprot.org/uniprot/P15188 P15188] | ||
+ | ** [http://www.uniprot.org/uniprot/P07922 P07922] | ||
+ | ** [http://www.uniprot.org/uniprot/P0A5M6 P0A5M6] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JV18 Q9JV18] | ||
+ | ** [http://www.uniprot.org/uniprot/P25971 P25971] | ||
+ | ** [http://www.uniprot.org/uniprot/P46535 P46535] | ||
+ | ** [http://www.uniprot.org/uniprot/P31754 P31754] | ||
+ | ** [http://www.uniprot.org/uniprot/P32430 P32430] | ||
+ | ** [http://www.uniprot.org/uniprot/Q01637 Q01637] | ||
+ | ** [http://www.uniprot.org/uniprot/P09556 P09556] | ||
+ | ** [http://www.uniprot.org/uniprot/P21594 P21594] | ||
+ | ** [http://www.uniprot.org/uniprot/Q06375 Q06375] | ||
+ | ** [http://www.uniprot.org/uniprot/P41769 P41769] | ||
+ | ** [http://www.uniprot.org/uniprot/Q18516 Q18516] | ||
+ | ** [http://www.uniprot.org/uniprot/Q59654 Q59654] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42586 Q42586] | ||
+ | ** [http://www.uniprot.org/uniprot/P48844 P48844] | ||
+ | ** [http://www.uniprot.org/uniprot/P43230 P43230] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42942 Q42942] | ||
+ | ** [http://www.uniprot.org/uniprot/O74110 O74110] | ||
+ | </div> | ||
+ | {{#set: direction=left-to-right}} | ||
+ | {{#set: common-name=orotidine-5'-phosphate decarboxylase}} | ||
+ | {{#set: ec-number=ec-4.1.1.23}} | ||
+ | {{#set: nb gene associated=2}} | ||
+ | {{#set: nb pathway associated=3}} | ||
+ | {{#set: reconstruction category=orthology|annotation}} | ||
+ | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=saccharina_japonica_genome}} | + | {{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}} |
Revision as of 08:37, 15 March 2021
Contents
Reaction OROTPDECARB-RXN
- direction:
- left-to-right
- common-name:
- orotidine-5'-phosphate decarboxylase
- ec-number:
Reaction formula
- 1 OROTIDINE-5-PHOSPHATE[c] + 1 PROTON[c] => 1 CARBON-DIOXIDE[c] + 1 UMP[c]
Gene(s) associated with this reaction
- Gene: SJ02816
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
- Gene: SJ02815
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-5686, UMP biosynthesis I:
- 6 reactions found over 6 reactions in the full pathway
- PWY-7790, UMP biosynthesis II:
- 5 reactions found over 7 reactions in the full pathway
- PWY-7791, UMP biosynthesis III:
- 5 reactions found over 6 reactions in the full pathway
Reconstruction information
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
External links
- METANETX-RXN : MNXR102190
- RHEA:
- LIGAND-RXN:
- UNIPROT: